LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-128-3p


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Gene
miRNA
Score
DIANA Links
NPHP3-AS1
hsa-miR-128-3p
0.718
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000504440
Biotype: antisense
Gene id: ENSG00000248724
Gene Name: NPHP3-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
476-495
0.013
1
7mer
1879-1903
0.006
0
7mer
570-585
0.003
1
6mer
1766-1787
0.002
1
6mer
1166-1185
0.002
3
HAND2-AS1
hsa-miR-128-3p
0.718
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000502896
Biotype: antisense
Gene id: ENSG00000237125
Gene Name: HAND2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4936-4956
0.016
0
6mer
4891-4911
0.005
3
6mer
268-285
0.003
2
6mer
871-882
0.002
2
HAND2-AS1
hsa-miR-128-3p
0.718
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000508534
Biotype: antisense
Gene id: ENSG00000237125
Gene Name: HAND2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2802-2822
0.017
0
6mer
2757-2777
0.005
3
6mer
361-378
0.003
2
RP11-114H23.1
hsa-miR-128-3p
0.718
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000552856
Biotype: lincRNA
Gene id: ENSG00000258077
Gene Name: RP11-114H23.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
680-702
0.010
1
6mer
177-203
0.007
3
6mer
439-455
0.005
3
6mer
257-281
0.004
1
LINC00963
hsa-miR-128-3p
0.717
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000423918
Biotype: lincRNA
Gene id: ENSG00000204054
Gene Name: LINC00963
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
687-705
0.026
1
KCTD21-AS1
hsa-miR-128-3p
0.717
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000532831
Biotype: antisense
Gene id: ENSG00000246174
Gene Name: KCTD21-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
93-108
0.026
1
RP11-324D17.3
hsa-miR-128-3p
0.717
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000612285
Biotype: lincRNA
Gene id: ENSG00000275147
Gene Name: RP11-324D17.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
543-566
0.024
2
6mer
230-243
0.002
1
XLOC_000587
hsa-miR-128-3p
0.717
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001308
Biotype: transcript isomorph
Gene id: XLOC_000587
Gene Name: XLOC_000587
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1081-1102
0.021
0
6mer
92-108
0.004
1
GTF3C2-AS1
hsa-miR-128-3p
0.717
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000589853
Biotype: antisense
Gene id: ENSG00000234945
Gene Name: GTF3C2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
423-445
0.021
1
6mer
351-364
0.005
3
RP11-196G11.4
hsa-miR-128-3p
0.717
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000576336
Biotype: sense_intronic
Gene id: ENSG00000262766
Gene Name: RP11-196G11.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
516-522
0.019
1
7mer
333-349
0.007
0
RP1-239B22.5
hsa-miR-128-3p
0.717
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000568280
Biotype: antisense
Gene id: ENSG00000260196
Gene Name: RP1-239B22.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2842-2855
0.012
1
6mer
256-273
0.004
1
7mer
118-133
0.003
Not Conserved
6mer
2550-2572
0.003
2
6mer
2460-2482
0.002
1
6mer
1732-1759
0.001
0
RP5-1139I1.1
hsa-miR-128-3p
0.716
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000428222
Biotype: lincRNA
Gene id: ENSG00000230392
Gene Name: RP5-1139I1.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
- Testes Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
444-465
0.020
Not Conserved
7mer
1852-1873
0.004
Not Conserved
7mer
771-788
0.002
Not Conserved
AC004540.5
hsa-miR-128-3p
0.716
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000430548
Biotype: lincRNA
Gene id: ENSG00000214870
Gene Name: AC004540.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
414-431
0.026
1
XLOC_010966
hsa-miR-128-3p
0.716
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022669
Biotype: transcript isomorph
Gene id: XLOC_010966
Gene Name: XLOC_010966
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Colon Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1780-1801
0.014
2
8mer
1006-1024
0.009
0
6mer
455-481
0.003
0
XLOC_009637
hsa-miR-128-3p
0.716
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00021032
Biotype: transcript isomorph
Gene id: XLOC_009637
Gene Name: XLOC_009637
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
191-213
0.021
2
6mer
427-440
0.005
1
STX18-AS1
hsa-miR-128-3p
0.715
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000610009
Biotype: antisense
Gene id: ENSG00000247708
Gene Name: STX18-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2124-2144
0.012
2
7mer
921-932
0.007
2
6mer
2290-2299
0.004
Not Conserved
6mer
1888-1901
0.003
1
ZNF295-AS1
hsa-miR-128-3p
0.715
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000412906
Biotype: lincRNA
Gene id: ENSG00000237232
Gene Name: ZNF295-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
920-942
0.023
0
6mer
600-615
0.003
0
XLOC_000695
hsa-miR-128-3p
0.715
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001384
Biotype: transcript isomorph
Gene id: XLOC_000695
Gene Name: XLOC_000695
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
617-642
0.013
2
6mer
15-31
0.005
3
6mer
3-29
0.004
1
7mer
1439-1466
0.003
0
7mer
1803-1827
0.001
Not Conserved
RP1-178F15.4
hsa-miR-128-3p
0.714
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000607839
Biotype: antisense
Gene id: ENSG00000272030
Gene Name: RP1-178F15.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
365-389
0.026
6
RP11-1C8.4
hsa-miR-128-3p
0.714
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000517376
Biotype: antisense
Gene id: ENSG00000253477
Gene Name: RP11-1C8.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
376-393
0.020
1
6mer
597-618
0.003
2
7mer
313-325
0.003
0
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