LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-128-3p


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Gene
miRNA
Score
DIANA Links
XLOC_011837
hsa-miR-128-3p
0.726
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024918
Biotype: transcript isomorph
Gene id: XLOC_011837
Gene Name: XLOC_011837
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1269-1293
0.015
0
7mer
2154-2169
0.007
Not Conserved
6mer
1682-1698
0.003
0
6mer
1487-1505
0.002
0
KCTD21-AS1
hsa-miR-128-3p
0.726
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000530261
Biotype: antisense
Gene id: ENSG00000246174
Gene Name: KCTD21-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
69-84
0.027
1
RAD21-AS1
hsa-miR-128-3p
0.726
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000521487
Biotype: antisense
Gene id: ENSG00000253327
Gene Name: RAD21-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1629-1642
0.027
1
RP11-661G16.1
hsa-miR-128-3p
0.725
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000554967
Biotype: antisense
Gene id: ENSG00000258437
Gene Name: RP11-661G16.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
178-199
0.015
1
7mer
369-374
0.012
1
CTD-2541M15.4
hsa-miR-128-3p
0.725
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000607697
Biotype: lincRNA
Gene id: ENSG00000271927
Gene Name: CTD-2541M15.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2361-2383
0.025
0
6mer
2149-2171
0.002
Not Conserved
RP11-83N9.6
hsa-miR-128-3p
0.725
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000617896
Biotype: lincRNA
Gene id: ENSG00000275329
Gene Name: RP11-83N9.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1785-1808
0.012
0
8mer
917-941
0.010
1
6mer
1371-1382
0.003
0
6mer
1383-1395
0.001
0
RP11-383M4.6
hsa-miR-128-3p
0.725
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000585776
Biotype: lincRNA
Gene id: ENSG00000267559
Gene Name: RP11-383M4.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2092-2115
0.027
0
AC007879.2
hsa-miR-128-3p
0.725
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: NR_110283.1
Biotype: lincRNA
Gene id: NR_110283.1 (gene)
Gene Name: AC007879.2
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
32-48
0.027
2
RP11-384O8.1
hsa-miR-128-3p
0.725
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000587099
Biotype: lincRNA
Gene id: ENSG00000267034
Gene Name: RP11-384O8.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
619-625
0.023
6
6mer
1302-1312
0.004
1
RP11-15A1.7
hsa-miR-128-3p
0.725
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000589021
Biotype: antisense
Gene id: ENSG00000266921
Gene Name: RP11-15A1.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
139-159
0.010
3
7mer
1972-1988
0.006
1
7mer
223-240
0.005
0
6mer
1572-1582
0.003
2
6mer
1964-1979
0.002
1
XLOC_001527
hsa-miR-128-3p
0.724
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003732
Biotype: transcript isomorph
Gene id: XLOC_001527
Gene Name: XLOC_001527
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Brain Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Lung Normal/Primary
- Prostate Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
56-67
0.018
3
6mer
361-373
0.007
8
6mer
119-130
0.002
0
AC097467.2
hsa-miR-128-3p
0.724
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000595229
Biotype: antisense
Gene id: ENSG00000250910
Gene Name: AC097467.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
710-730
0.026
1
RNASEK-C17orf49
hsa-miR-128-3p
0.724
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: NR_037717.1
Biotype: sense
Gene id: NR_037717.1 (gene)
Gene Name: RNASEK-C17orf49
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HREpiC Kidney Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1355-1371
0.023
4
6mer
1272-1293
0.003
7
XLOC_010253
hsa-miR-128-3p
0.724
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020988
Biotype: transcript isomorph
Gene id: XLOC_010253
Gene Name: XLOC_010253
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
18-30
0.026
2
XLOC_011406
hsa-miR-128-3p
0.724
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023592
Biotype: transcript isomorph
Gene id: XLOC_011406
Gene Name: XLOC_011406
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
180-201
0.026
Not Conserved
RP11-1028N23.4
hsa-miR-128-3p
0.724
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000551940
Biotype: lincRNA
Gene id: ENSG00000257407
Gene Name: RP11-1028N23.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
144-164
0.017
1
7mer
299-316
0.009
1
KTN1-AS1
hsa-miR-128-3p
0.724
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000335142
Biotype: antisense
Gene id: ENSG00000186615
Gene Name: KTN1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
200-221
0.013
3
7mer
1016-1042
0.009
1
6mer
887-900
0.003
4
6mer
878-899
0.002
2
RP11-398E10.1
hsa-miR-128-3p
0.723
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000556405
Biotype: lincRNA
Gene id: ENSG00000258998
Gene Name: RP11-398E10.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
157-180
0.011
Not Conserved
8mer
1241-1252
0.011
1
6mer
1938-1947
0.003
2
6mer
1899-1911
0.001
1
CTC-321K16.4
hsa-miR-128-3p
0.723
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000508452
Biotype: lincRNA
Gene id: ENSG00000251045
Gene Name: CTC-321K16.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
261-272
0.014
1
8mer
1860-1883
0.012
2
LAMTOR5-AS1
hsa-miR-128-3p
0.723
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000608602
Biotype: antisense
Gene id: ENSG00000224699
Gene Name: LAMTOR5-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
689-703
0.026
0
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