LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-128-3p


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Gene
miRNA
Score
DIANA Links
MAMDC2-AS1
hsa-miR-128-3p
0.728
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000377178
Biotype: antisense
Gene id: ENSG00000204706
Gene Name: MAMDC2-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
840-862
0.023
0
6mer
1355-1371
0.004
1
XLOC_011130
hsa-miR-128-3p
0.728
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022413
Biotype: transcript isomorph
Gene id: XLOC_011130
Gene Name: XLOC_011130
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1453-1475
0.024
9
6mer
360-372
0.003
1
CECR7
hsa-miR-128-3p
0.728
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000609596
Biotype: lincRNA
Gene id: ENSG00000237438
Gene Name: CECR7
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1427-1448
0.015
0
7mer
1058-1075
0.010
0
6mer
1828-1843
0.002
Not Conserved
AC093627.9
hsa-miR-128-3p
0.728
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000497320
Biotype: lincRNA
Gene id: ENSG00000242474
Gene Name: AC093627.9
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
250-274
0.018
0
6mer
19-41
0.006
0
6mer
329-355
0.003
0
AC005609.19
hsa-miR-128-3p
0.728
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000623320
Biotype: antisense
Gene id: ENSG00000278907
Gene Name: AC005609.19
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
297-308
0.027
0
LINC00402
hsa-miR-128-3p
0.728
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000419499
Biotype: lincRNA
Gene id: ENSG00000235532
Gene Name: LINC00402
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1814-1831
0.022
2
6mer
175-192
0.004
2
CKMT2-AS1
hsa-miR-128-3p
0.728
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000501927
Biotype: antisense
Gene id: ENSG00000247572
Gene Name: CKMT2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1548-1563
0.020
1
7mer
773-788
0.004
0
6mer
16-30
0.002
1
NDUFA6-AS1
hsa-miR-128-3p
0.728
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000617009
Biotype: antisense
Gene id: ENSG00000237037
Gene Name: NDUFA6-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
252-268
0.027
0
RASSF8-AS1
hsa-miR-128-3p
0.728
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000542086
Biotype: antisense
Gene id: ENSG00000246695
Gene Name: RASSF8-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
314-331
0.019
0
7mer
331-346
0.008
1
RP11-56B16.5
hsa-miR-128-3p
0.728
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000558142
Biotype: antisense
Gene id: ENSG00000259201
Gene Name: RP11-56B16.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
203-216
0.027
1
LINC00649
hsa-miR-128-3p
0.727
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000616030
Biotype: antisense
Gene id: ENSG00000237945
Gene Name: LINC00649
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
658-670
0.027
1
AC068858.1
hsa-miR-128-3p
0.727
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000525114
Biotype: lincRNA
Gene id: ENSG00000254654
Gene Name: AC068858.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
201-219
0.016
0
7mer
725-742
0.009
1
6mer
299-319
0.003
1
CTC-281M20.4
hsa-miR-128-3p
0.727
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000507398
Biotype: lincRNA
Gene id: ENSG00000249403
Gene Name: CTC-281M20.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
313-323
0.027
1
RP1-265C24.8
hsa-miR-128-3p
0.727
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000565046
Biotype: lincRNA
Gene id: ENSG00000261839
Gene Name: RP1-265C24.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
562-582
0.020
0
7mer
2113-2132
0.006
Not Conserved
XLOC_009117
hsa-miR-128-3p
0.727
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019077
Biotype: transcript isomorph
Gene id: XLOC_009117
Gene Name: XLOC_009117
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
201-219
0.015
0
7mer
725-742
0.009
1
6mer
299-319
0.003
1
TNR-IT1
hsa-miR-128-3p
0.727
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000455447
Biotype: sense_intronic
Gene id: ENSG00000235628
Gene Name: TNR-IT1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
389-406
0.024
0
6mer
577-590
0.003
1
RP4-761J14.8
hsa-miR-128-3p
0.727
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000396799
Biotype: antisense
Gene id: ENSG00000219410
Gene Name: RP4-761J14.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1511-1525
0.020
5
6mer
1288-1302
0.004
5
6mer
198-213
0.002
0
XLOC_011102
hsa-miR-128-3p
0.726
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022831
Biotype: transcript isomorph
Gene id: XLOC_011102
Gene Name: XLOC_011102
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1452-1465
0.018
1
7mer
841-863
0.009
2
AC007879.2
hsa-miR-128-3p
0.726
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000417096
Biotype: lincRNA
Gene id: ENSG00000234902
Gene Name: AC007879.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
5-21
0.027
2
RP11-428J1.4
hsa-miR-128-3p
0.726
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000606227
Biotype: lincRNA
Gene id: ENSG00000271978
Gene Name: RP11-428J1.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2113-2130
0.012
1
7mer
944-966
0.008
1
6mer
2123-2137
0.003
1
6mer
774-783
0.003
0
6mer
1754-1765
0.001
1
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