LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-128-3p


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Gene
miRNA
Score
DIANA Links
AC016738.4
hsa-miR-128-3p
0.732
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000452364
Biotype: antisense
Gene id: ENSG00000223947
Gene Name: AC016738.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1747-1768
0.014
6
7mer
149-154
0.013
Not Conserved
XLOC_011176
hsa-miR-128-3p
0.732
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023866
Biotype: transcript isomorph
Gene id: XLOC_011176
Gene Name: XLOC_011176
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1433-1443
0.027
0
LAMTOR5-AS1
hsa-miR-128-3p
0.732
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000608499
Biotype: antisense
Gene id: ENSG00000224699
Gene Name: LAMTOR5-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
525-539
0.027
0
RP11-103H7.3
hsa-miR-128-3p
0.732
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000519123
Biotype: lincRNA
Gene id: ENSG00000253530
Gene Name: RP11-103H7.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
278-288
0.027
1
MYT1L-AS1
hsa-miR-128-3p
0.732
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000422175
Biotype: antisense
Gene id: ENSG00000225619
Gene Name: MYT1L-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2886-2899
0.024
0
6mer
2331-2350
0.003
4
XLOC_002576
hsa-miR-128-3p
0.732
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00005945
Biotype: transcript isomorph
Gene id: XLOC_002576
Gene Name: XLOC_002576
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
53-72
0.027
Not Conserved
XLOC_007734
hsa-miR-128-3p
0.732
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016354
Biotype: transcript isomorph
Gene id: XLOC_007734
Gene Name: XLOC_007734
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Lung Normal/Primary
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
940-961
0.021
2
6mer
247-261
0.006
2
XLOC_000022
hsa-miR-128-3p
0.731
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000807
Biotype: transcript isomorph
Gene id: XLOC_000022
Gene Name: XLOC_000022
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
214-231
0.014
0
6mer
381-398
0.005
0
7mer
1742-1756
0.004
0
6mer
3271-3287
0.002
0
6mer
528-542
0.002
0
6mer
2464-2478
0.001
1
U82695.10
hsa-miR-128-3p
0.731
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000569962
Biotype: lincRNA
Gene id: ENSG00000259886
Gene Name: U82695.10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
444-470
0.012
1
7mer
922-937
0.009
1
6mer
2697-2715
0.006
2
LOC100132111
hsa-miR-128-3p
0.731
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_024237.1
Biotype: antisense
Gene id: NR_024237.1 (gene)
Gene Name: LOC100132111
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
587-612
0.027
2
RP11-404I7.1
hsa-miR-128-3p
0.731
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000511916
Biotype: lincRNA
Gene id: ENSG00000249513
Gene Name: RP11-404I7.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
412-423
0.027
1
ZNF295-AS1
hsa-miR-128-3p
0.730
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000455701
Biotype: lincRNA
Gene id: ENSG00000237232
Gene Name: ZNF295-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
718-740
0.024
0
6mer
398-413
0.003
0
GS1-600G8.5
hsa-miR-128-3p
0.730
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000443965
Biotype: lincRNA
Gene id: ENSG00000235385
Gene Name: GS1-600G8.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HREpiC Kidney Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
34-46
0.011
0
6mer
602-626
0.008
5
6mer
168-195
0.004
3
6mer
213-231
0.002
0
6mer
531-547
0.002
1
PINK1-AS
hsa-miR-128-3p
0.730
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000451424
Biotype: antisense
Gene id: ENSG00000117242
Gene Name: PINK1-AS
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3892-3919
0.020
1
8mer
1568-1585
0.004
1
6mer
1762-1787
0.001
0
6mer
3127-3152
0.001
2
RASSF8-AS1
hsa-miR-128-3p
0.730
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000535436
Biotype: antisense
Gene id: ENSG00000246695
Gene Name: RASSF8-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
311-328
0.019
0
7mer
328-343
0.008
1
LINC00599
hsa-miR-128-3p
0.729
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000519461
Biotype: lincRNA
Gene id: ENSG00000253230
Gene Name: LINC00599
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Lung Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1112-1123
0.009
1
6mer
2748-2773
0.005
5
8mer+mismatch
64-90
0.005
2
6mer
2604-2613
0.004
0
6mer
2808-2827
0.003
0
6mer
1568-1580
0.001
0
XLOC_008942
hsa-miR-128-3p
0.729
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018599
Biotype: transcript isomorph
Gene id: XLOC_008942
Gene Name: XLOC_008942
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
24-38
0.022
0
6mer
169-192
0.005
1
XLOC_001195
hsa-miR-128-3p
0.729
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001810
Biotype: transcript isomorph
Gene id: XLOC_001195
Gene Name: XLOC_001195
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2298-2313
0.010
0
8mer
3419-3436
0.005
0
6mer
338-350
0.004
1
6mer
1301-1325
0.002
0
7mer
5691-5706
0.002
1
6mer
9089-9115
0.001
1
6mer
3064-3082
0.001
2
6mer
4331-4354
0.001
1
6mer
1275-1301
0.001
2
LINC01184
hsa-miR-128-3p
0.729
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000508878
Biotype: lincRNA
Gene id: ENSG00000245937
Gene Name: LINC01184
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
238-244
0.027
0
ENTPD1-AS1
hsa-miR-128-3p
0.729
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000452728
Biotype: antisense
Gene id: ENSG00000226688
Gene Name: ENTPD1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
100-126
0.015
0
7mer
478-503
0.009
0
6mer
705-718
0.003
1
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