LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-128-3p


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Gene
miRNA
Score
DIANA Links
RP11-1096G20.5
hsa-miR-128-3p
0.737
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000580270
Biotype: antisense
Gene id: ENSG00000266368
Gene Name: RP11-1096G20.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
292-300
0.025
3
6mer
399-422
0.002
1
RP11-195F19.30
hsa-miR-128-3p
0.737
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000564224
Biotype: retained_intron
Gene id: ENSG00000261215
Gene Name: RP11-195F19.30
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
985-999
0.015
2
7mer
2716-2727
0.008
1
8mer+wobble
1876-1892
0.005
0
XLOC_005303
hsa-miR-128-3p
0.737
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011820
Biotype: transcript isomorph
Gene id: XLOC_005303
Gene Name: XLOC_005303
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Colon Normal/Primary
- Kidney Normal/Primary
- Ovary Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
577-582
0.024
3
6mer
199-220
0.004
1
PTOV1-AS1
hsa-miR-128-3p
0.737
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000596521
Biotype: antisense
Gene id: ENSG00000268006
Gene Name: PTOV1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
381-403
0.020
1
7mer
936-951
0.003
1
6mer
1682-1692
0.002
0
6mer
852-873
0.002
3
XLOC_003874
hsa-miR-128-3p
0.737
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008419
Biotype: transcript isomorph
Gene id: XLOC_003874
Gene Name: XLOC_003874
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1724-1744
0.020
1
6mer
1848-1860
0.007
2
LINC00086
hsa-miR-128-3p
0.737
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: NR_024359.1
Biotype: lincRNA
Gene id: NR_024359.1 (gene)
Gene Name: LINC00086
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HMEpC Mammary Gland Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2786-2799
0.021
1
8mer
1034-1050
0.006
0
RP11-88H9.2
hsa-miR-128-3p
0.737
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000438293
Biotype: lincRNA
Gene id: ENSG00000231437
Gene Name: RP11-88H9.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3012-3024
0.018
1
6mer
2256-2272
0.003
1
6mer
2535-2557
0.003
2
7mer
2481-2494
0.003
0
LINC01224
hsa-miR-128-3p
0.736
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000596283
Biotype: lincRNA
Gene id: ENSG00000269416
Gene Name: LINC01224
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1005-1016
0.027
0
PWRN1
hsa-miR-128-3p
0.736
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000568045
Biotype: lincRNA
Gene id: ENSG00000259905
Gene Name: PWRN1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
219-229
0.023
0
6mer
997-1008
0.002
Not Conserved
6mer
1000-1018
0.002
Not Conserved
AC104654.2
hsa-miR-128-3p
0.736
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000436551
Biotype: lincRNA
Gene id: ENSG00000234362
Gene Name: AC104654.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
232-252
0.027
7
XLOC_009876
hsa-miR-128-3p
0.736
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020560
Biotype: transcript isomorph
Gene id: XLOC_009876
Gene Name: XLOC_009876
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
349-367
0.027
1
RP11-343D2.11
hsa-miR-128-3p
0.736
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000508964
Biotype: antisense
Gene id: ENSG00000249225
Gene Name: RP11-343D2.11
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
363-389
0.027
0
AC025171.1
hsa-miR-128-3p
0.736
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000399543
Biotype: retained_intron
Gene id: ENSG00000215068
Gene Name: AC025171.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
HeLa Cervix Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
40-58
0.010
1
6mer
1858-1871
0.007
1
6mer
218-234
0.004
0
6mer
528-543
0.003
0
6mer
391-417
0.003
0
NRON
hsa-miR-128-3p
0.735
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: NR_045006.1
Biotype: antisense
Gene id: NR_045006.1 (gene)
Gene Name: NRON
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2353-2365
0.023
0
6mer
795-809
0.003
0
6mer
1597-1614
0.001
1
TTN-AS1
hsa-miR-128-3p
0.735
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000456053
Biotype: antisense
Gene id: ENSG00000237298
Gene Name: TTN-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1273-1287
0.026
7
6mer
1005-1032
0.002
3
MYT1L-AS1
hsa-miR-128-3p
0.735
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000448106
Biotype: antisense
Gene id: ENSG00000225619
Gene Name: MYT1L-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2952-2965
0.024
0
6mer
2397-2416
0.003
4
RP11-414J4.2
hsa-miR-128-3p
0.735
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000564823
Biotype: retained_intron
Gene id: ENSG00000261606
Gene Name: RP11-414J4.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
5182-5195
0.023
0
7mer
4581-4596
0.003
5
6mer
2474-2500
0.001
0
XLOC_009028
hsa-miR-128-3p
0.735
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019070
Biotype: transcript isomorph
Gene id: XLOC_009028
Gene Name: XLOC_009028
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
343-364
0.025
1
6mer
645-664
0.002
Not Conserved
LINC01520
hsa-miR-128-3p
0.735
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000441457
Biotype: lincRNA
Gene id: ENSG00000230962
Gene Name: LINC01520
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
436-450
0.021
1
6mer
539-566
0.003
0
6mer
1066-1083
0.003
2
RP11-44D19.1
hsa-miR-128-3p
0.735
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000522281
Biotype: lincRNA
Gene id: ENSG00000253376
Gene Name: RP11-44D19.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
741-750
0.027
1
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