LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-128-3p


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Gene
miRNA
Score
DIANA Links
AC006946.16
hsa-miR-128-3p
0.741
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000608373
Biotype: lincRNA
Gene id: ENSG00000273203
Gene Name: AC006946.16
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
70-93
0.013
0
6mer
26-44
0.010
1
6mer
2720-2742
0.005
1
RP11-145O15.3
hsa-miR-128-3p
0.741
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000529018
Biotype: antisense
Gene id: ENSG00000255069
Gene Name: RP11-145O15.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
616-634
0.014
0
7mer
1073-1098
0.013
1
6mer
965-987
0.001
Not Conserved
LINC00477
hsa-miR-128-3p
0.741
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000483544
Biotype: lincRNA
Gene id: ENSG00000197503
Gene Name: LINC00477
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
226-244
0.028
0
XLOC_012839
hsa-miR-128-3p
0.741
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026518
Biotype: transcript isomorph
Gene id: XLOC_012839
Gene Name: XLOC_012839
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
6531-6551
0.020
5
6mer
753-779
0.004
0
6mer
4213-4227
0.002
1
6mer
1804-1812
0.002
1
6mer
3114-3141
0.001
0
LINC00433
hsa-miR-128-3p
0.741
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: NR_047021.1
Biotype: lincRNA
Gene id: NR_047021.1 (gene)
Gene Name: LINC00433
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
745-764
0.028
1
RP11-30L3.2
hsa-miR-128-3p
0.741
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000577641
Biotype: antisense
Gene id: ENSG00000266696
Gene Name: RP11-30L3.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
97-116
0.028
2
LEMD1-AS1
hsa-miR-128-3p
0.740
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000447832
Biotype: antisense
Gene id: ENSG00000226235
Gene Name: LEMD1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1830-1848
0.015
0
6mer
2590-2599
0.006
2
6mer
2694-2708
0.004
0
7mer
812-835
0.002
0
6mer
903-915
0.002
2
MIR29B1
hsa-miR-128-3p
0.740
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000432045
Biotype: lincRNA
Gene id: ENSG00000226380
Gene Name: MIR29B1
UCSC graphic:
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2799-2819
0.011
0
6mer
15-25
0.007
7
7mer
462-477
0.006
1
6mer
566-588
0.002
0
6mer
5702-5723
0.002
1
RP11-867G2.6
hsa-miR-128-3p
0.740
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000544019
Biotype: lincRNA
Gene id: ENSG00000255666
Gene Name: RP11-867G2.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
522-537
0.028
1
RP11-1085N6.5
hsa-miR-128-3p
0.740
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000557136
Biotype: lincRNA
Gene id: ENSG00000258776
Gene Name: RP11-1085N6.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
647-654
0.023
0
7mer
519-531
0.005
0
RP11-15A1.7
hsa-miR-128-3p
0.739
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000586860
Biotype: antisense
Gene id: ENSG00000266921
Gene Name: RP11-15A1.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
142-162
0.010
3
7mer
2343-2359
0.006
1
7mer
226-243
0.005
0
6mer
2302-2312
0.004
2
7mer
1041-1055
0.003
Not Conserved
XLOC_002227
hsa-miR-128-3p
0.739
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004353
Biotype: transcript isomorph
Gene id: XLOC_002227
Gene Name: XLOC_002227
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
264-277
0.028
0
XLOC_013368
hsa-miR-128-3p
0.739
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027384
Biotype: transcript isomorph
Gene id: XLOC_013368
Gene Name: XLOC_013368
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Colon Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
958-981
0.010
0
6mer
680-701
0.004
1
6mer
3114-3125
0.003
0
6mer
922-941
0.002
3
6mer
638-664
0.002
Not Conserved
7mer
1486-1502
0.001
Not Conserved
6mer
2739-2750
0.001
Not Conserved
6mer
1610-1630
0.001
0
6mer
2696-2711
0.001
0
6mer
2501-2523
0.001
Not Conserved
6mer
2723-2750
0.001
0
6mer
1531-1543
0.001
0
6mer
2453-2472
0.001
0
RP11-867G2.6
hsa-miR-128-3p
0.739
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000542479
Biotype: lincRNA
Gene id: ENSG00000255666
Gene Name: RP11-867G2.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
409-424
0.028
1
PTOV1-AS1
hsa-miR-128-3p
0.739
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: NR_040037.1
Biotype: antisense
Gene id: NR_040037.1 (gene)
Gene Name: PTOV1-AS1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
375-397
0.020
1
7mer
930-945
0.003
1
6mer
1676-1686
0.002
0
6mer
846-867
0.002
3
SPACA6P-AS
hsa-miR-128-3p
0.739
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000602324
Biotype: lincRNA
Gene id: ENSG00000269959
Gene Name: SPACA6P-AS
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3578-3600
0.026
1
6mer
3043-3061
0.001
1
LINC00333
hsa-miR-128-3p
0.739
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000446314
Biotype: lincRNA
Gene id: ENSG00000233349
Gene Name: LINC00333
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
234-258
0.028
1
RP11-482H16.1
hsa-miR-128-3p
0.738
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000607540
Biotype: processed_transcript
Gene id: ENSG00000271894
Gene Name: RP11-482H16.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1877-1884
0.009
1
7mer
1838-1848
0.009
1
6mer
1660-1671
0.006
9
6mer
1301-1317
0.003
6
CTD-2196E14.5
hsa-miR-128-3p
0.738
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000566143
Biotype: antisense
Gene id: ENSG00000261266
Gene Name: CTD-2196E14.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
242-254
0.018
1
7mer
529-545
0.010
2
XLOC_002282
hsa-miR-128-3p
0.738
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003380
Biotype: transcript isomorph
Gene id: XLOC_002282
Gene Name: XLOC_002282
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HREpiC Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
- Lung Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
571-587
0.010
0
6mer
101-106
0.006
1
7mer
1657-1669
0.005
1
6mer
1691-1713
0.003
1
6mer
1499-1526
0.003
1
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