LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-128-3p


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Gene
miRNA
Score
DIANA Links
AP000344.3
hsa-miR-128-3p
0.746
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000428415
Biotype: lincRNA
Gene id: ENSG00000234928
Gene Name: AP000344.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
301-319
0.028
1
HAND2-AS1
hsa-miR-128-3p
0.746
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000512246
Biotype: antisense
Gene id: ENSG00000237125
Gene Name: HAND2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
642-662
0.020
0
6mer
597-617
0.005
3
6mer
478-495
0.003
2
FGF13-AS1
hsa-miR-128-3p
0.746
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000438238
Biotype: antisense
Gene id: ENSG00000226031
Gene Name: FGF13-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
188-212
0.028
6
FGF13-AS1
hsa-miR-128-3p
0.746
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: NR_038405.1
Biotype: antisense
Gene id: NR_038405.1 (gene)
Gene Name: FGF13-AS1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
188-212
0.028
6
HAND2-AS1
hsa-miR-128-3p
0.746
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000509640
Biotype: antisense
Gene id: ENSG00000237125
Gene Name: HAND2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
432-452
0.020
0
6mer
387-407
0.005
3
6mer
268-285
0.003
2
AC006116.15
hsa-miR-128-3p
0.746
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000593258
Biotype: sense_intronic
Gene id: ENSG00000267429
Gene Name: AC006116.15
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
335-362
0.016
0
6mer
1008-1019
0.012
0
KCTD21-AS1
hsa-miR-128-3p
0.746
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000527321
Biotype: antisense
Gene id: ENSG00000246174
Gene Name: KCTD21-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
49-64
0.028
1
HAND2-AS1
hsa-miR-128-3p
0.746
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: NR_003679.1
Biotype: lincRNA
Gene id: NR_003679.1 (gene)
Gene Name: HAND2-AS1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
525-545
0.020
0
6mer
480-500
0.005
3
6mer
361-378
0.003
2
IQCF5-AS1
hsa-miR-128-3p
0.745
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000440723
Biotype: antisense
Gene id: ENSG00000235455
Gene Name: IQCF5-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
678-694
0.023
1
6mer
1623-1649
0.003
1
6mer
1836-1855
0.002
1
AC006547.8
hsa-miR-128-3p
0.745
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000412713
Biotype: antisense
Gene id: ENSG00000243762
Gene Name: AC006547.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
168-186
0.028
Not Conserved
RASSF8-AS1
hsa-miR-128-3p
0.745
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000546134
Biotype: antisense
Gene id: ENSG00000246695
Gene Name: RASSF8-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
464-481
0.020
0
7mer
481-496
0.008
1
LINC00624
hsa-miR-128-3p
0.745
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000619867
Biotype: antisense
Gene id: ENSG00000278811
Gene Name: LINC00624
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2895-2917
0.008
0
7mer
2514-2525
0.006
2
7mer
872-893
0.006
1
6mer
330-353
0.003
0
6mer
987-1012
0.003
7
6mer
948-960
0.002
6
AF121898.3
hsa-miR-128-3p
0.745
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000517711
Biotype: antisense
Gene id: ENSG00000253500
Gene Name: AF121898.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
241-264
0.026
Not Conserved
6mer
554-570
0.002
0
MUC19
hsa-miR-128-3p
0.745
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000474954
Biotype: retained_intron
Gene id: ENSG00000205592
Gene Name: MUC19
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Testes Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
868-881
0.028
1
RP11-797A18.6
hsa-miR-128-3p
0.745
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000602975
Biotype: sense_intronic
Gene id: ENSG00000269951
Gene Name: RP11-797A18.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
242-251
0.011
0
7mer
406-419
0.008
1
6mer
582-600
0.005
2
6mer
467-493
0.003
1
RP11-571I18.5
hsa-miR-128-3p
0.745
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000595906
Biotype: antisense
Gene id: ENSG00000269506
Gene Name: RP11-571I18.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1042-1056
0.028
1
RP11-192H6.2
hsa-miR-128-3p
0.745
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000505040
Biotype: lincRNA
Gene id: ENSG00000251654
Gene Name: RP11-192H6.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
516-528
0.018
1
6mer
118-133
0.006
3
6mer
125-141
0.004
2
CTD-2529O21.2
hsa-miR-128-3p
0.745
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000570952
Biotype: antisense
Gene id: ENSG00000261978
Gene Name: CTD-2529O21.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
362-367
0.028
0
XLOC_001920
hsa-miR-128-3p
0.744
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004071
Biotype: transcript isomorph
Gene id: XLOC_001920
Gene Name: XLOC_001920
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1015-1035
0.020
0
6mer
1150-1172
0.008
0
RP11-555K2.4
hsa-miR-128-3p
0.744
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000623559
Biotype: lincRNA
Gene id: ENSG00000279321
Gene Name: RP11-555K2.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
415-427
0.018
0
6mer
56-82
0.010
1
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