LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-128-3p


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Gene
miRNA
Score
DIANA Links
RP11-519G16.5
hsa-miR-128-3p
0.750
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000559553
Biotype: antisense
Gene id: ENSG00000259342
Gene Name: RP11-519G16.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
336-354
0.029
0
RP11-220C2.1
hsa-miR-128-3p
0.749
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000582272
Biotype: antisense
Gene id: ENSG00000264458
Gene Name: RP11-220C2.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
332-342
0.019
2
8mer
165-181
0.009
1
LINC00616
hsa-miR-128-3p
0.749
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000513895
Biotype: lincRNA
Gene id: ENSG00000248307
Gene Name: LINC00616
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
328-345
0.029
1
XLOC_003006
hsa-miR-128-3p
0.749
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006387
Biotype: transcript isomorph
Gene id: XLOC_003006
Gene Name: XLOC_003006
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
551-578
0.022
1
6mer
363-373
0.007
4
XLOC_010676
hsa-miR-128-3p
0.749
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00022073
Biotype: transcript isomorph
Gene id: XLOC_010676
Gene Name: XLOC_010676
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
23-36
0.029
0
C21orf128
hsa-miR-128-3p
0.749
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000329015
Biotype: sense_overlapping
Gene id: ENSG00000184385
Gene Name: C21orf128
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
296-317
0.026
1
6mer
686-703
0.003
1
CTA-217C2.2
hsa-miR-128-3p
0.749
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000609432
Biotype: lincRNA
Gene id: ENSG00000273243
Gene Name: CTA-217C2.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
29-44
0.029
1
LIPE-AS1
hsa-miR-128-3p
0.749
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000594688
Biotype: antisense
Gene id: ENSG00000213904
Gene Name: LIPE-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2013-2029
0.018
0
6mer
2176-2203
0.004
1
7mer
1534-1543
0.004
1
6mer
687-710
0.002
1
MIR7-3HG
hsa-miR-128-3p
0.749
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000588758
Biotype: lincRNA
Gene id: ENSG00000176840
Gene Name: MIR7-3HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
725-738
0.029
2
LOC340074
hsa-miR-128-3p
0.748
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: NR_027127.1
Biotype: lincRNA
Gene id: NR_027127.1 (gene)
Gene Name: LOC340074
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
162-173
0.016
1
8mer
1761-1784
0.012
2
RP1-232N11.2
hsa-miR-128-3p
0.748
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000457704
Biotype: antisense
Gene id: ENSG00000229042
Gene Name: RP1-232N11.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1941-1955
0.029
0
AC114752.1
hsa-miR-128-3p
0.748
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000448204
Biotype: lincRNA
Gene id: ENSG00000238012
Gene Name: AC114752.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
113-130
0.029
0
XLOC_010784
hsa-miR-128-3p
0.748
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022456
Biotype: transcript isomorph
Gene id: XLOC_010784
Gene Name: XLOC_010784
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
11-33
0.028
0
FMR1-AS1
hsa-miR-128-3p
0.748
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000601841
Biotype: retained_intron
Gene id: ENSG00000268066
Gene Name: FMR1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1615-1634
0.014
0
7mer
1485-1503
0.008
2
6mer
318-324
0.004
1
6mer
826-846
0.002
1
XLOC_008075
hsa-miR-128-3p
0.748
mTTBlnEmP

Gene Details
Chromosome: chrX
Transcript: TCONS_00016940
Biotype: transcript isomorph
Gene id: XLOC_008075
Gene Name: XLOC_008075
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer+wobble
17-38
0.028
0
LINC01020
hsa-miR-128-3p
0.747
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000514474
Biotype: lincRNA
Gene id: ENSG00000215231
Gene Name: LINC01020
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
258-276
0.013
1
7mer
377-394
0.013
1
6mer
197-208
0.003
0
LINC00649
hsa-miR-128-3p
0.747
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000594370
Biotype: antisense
Gene id: ENSG00000237945
Gene Name: LINC00649
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
645-657
0.028
1
AL133493.2
hsa-miR-128-3p
0.747
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000441095
Biotype: lincRNA
Gene id: ENSG00000233922
Gene Name: AL133493.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
- Ovary Normal/Primary
- Testes Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
176-188
0.014
1
7mer
6154-6171
0.007
1
7mer
482-499
0.004
0
6mer
5940-5962
0.003
1
6mer
4137-4151
0.001
1
AC093690.1
hsa-miR-128-3p
0.747
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000418963
Biotype: antisense
Gene id: ENSG00000223522
Gene Name: AC093690.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
280-302
0.016
1
7mer
1315-1340
0.007
1
6mer
1653-1672
0.004
1
6mer
1131-1148
0.002
1
LINC00662
hsa-miR-128-3p
0.747
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000586954
Biotype: lincRNA
Gene id: ENSG00000261824
Gene Name: LINC00662
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
552-572
0.014
0
6mer
1981-2001
0.014
0
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