LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-128-3p


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Gene
miRNA
Score
DIANA Links
LINC01010
hsa-miR-128-3p
0.753
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: NR_038219.1
Biotype: lincRNA
Gene id: NR_038219.1 (gene)
Gene Name: LINC01010
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
240-262
0.015
0
7mer
1417-1433
0.009
3
6mer
121-134
0.005
2
XLOC_007165
hsa-miR-128-3p
0.753
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014561
Biotype: transcript isomorph
Gene id: XLOC_007165
Gene Name: XLOC_007165
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
682-701
0.029
1
AC008984.2
hsa-miR-128-3p
0.753
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000616950
Biotype: processed_transcript
Gene id: ENSG00000275210
Gene Name: AC008984.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
365-383
0.029
0
RP11-120J1.1
hsa-miR-128-3p
0.753
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000416996
Biotype: antisense
Gene id: ENSG00000225472
Gene Name: RP11-120J1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
447-471
0.023
0
7mer
474-488
0.005
0
6mer
546-560
0.002
0
AC105402.4
hsa-miR-128-3p
0.753
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000601658
Biotype: antisense
Gene id: ENSG00000231079
Gene Name: AC105402.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
161-187
0.029
4
RP11-23D24.2
hsa-miR-128-3p
0.752
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000488210
Biotype: antisense
Gene id: ENSG00000238755
Gene Name: RP11-23D24.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
301-312
0.022
Not Conserved
6mer
219-238
0.007
8
AC005780.1
hsa-miR-128-3p
0.752
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000592311
Biotype: lincRNA
Gene id: ENSG00000267320
Gene Name: AC005780.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
106-127
0.026
1
6mer
353-365
0.003
1
RP11-707P17.2
hsa-miR-128-3p
0.752
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000559977
Biotype: antisense
Gene id: ENSG00000259668
Gene Name: RP11-707P17.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
177-186
0.017
2
7mer
198-209
0.012
3
AC093627.10
hsa-miR-128-3p
0.752
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000484550
Biotype: lincRNA
Gene id: ENSG00000240859
Gene Name: AC093627.10
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4038-4062
0.018
0
8mer
3313-3326
0.009
1
8mer
3363-3376
0.002
Not Conserved
RP11-809O17.1
hsa-miR-128-3p
0.752
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000520885
Biotype: antisense
Gene id: ENSG00000253210
Gene Name: RP11-809O17.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
65-78
0.029
1
FLJ26245
hsa-miR-128-3p
0.752
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000566900
Biotype: lincRNA
Gene id: ENSG00000261122
Gene Name: FLJ26245
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1064-1085
0.010
0
6mer
446-468
0.009
0
6mer
727-745
0.008
0
6mer
143-153
0.002
Not Conserved
RP11-31K23.2
hsa-miR-128-3p
0.751
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000505564
Biotype: lincRNA
Gene id: ENSG00000248762
Gene Name: RP11-31K23.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
687-706
0.029
1
XLOC_012138
hsa-miR-128-3p
0.751
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025860
Biotype: transcript isomorph
Gene id: XLOC_012138
Gene Name: XLOC_012138
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
583-607
0.029
0
LIMS3-LOC440895
hsa-miR-128-3p
0.751
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: NR_027145.2
Biotype: sense
Gene id: NR_027145.2 (gene)
Gene Name: LIMS3-LOC440895
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
644-661
0.014
3
6mer
20-45
0.004
1
6mer
101-117
0.004
0
6mer
451-463
0.003
4
6mer
113-124
0.003
0
6mer
1409-1425
0.001
0
KB-1125A3.11
hsa-miR-128-3p
0.751
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000609825
Biotype: antisense
Gene id: ENSG00000272973
Gene Name: KB-1125A3.11
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
235-258
0.029
0
TSNAX-DISC1
hsa-miR-128-3p
0.750
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_028395.1
Biotype: sense
Gene id: NR_028395.1 (gene)
Gene Name: TSNAX-DISC1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2814-2826
0.024
3
6mer
141-153
0.003
1
7mer
1150-1173
0.001
Not Conserved
6mer
1168-1182
0.001
2
XLOC_008349
hsa-miR-128-3p
0.750
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00017697
Biotype: transcript isomorph
Gene id: XLOC_008349
Gene Name: XLOC_008349
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Breast Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
703-726
0.013
1
7mer
373-394
0.008
0
7mer
79-101
0.006
0
6mer
637-655
0.003
0
XLOC_013863
hsa-miR-128-3p
0.750
mTTBlnEmP

Gene Details
Chromosome: chr21
Transcript: TCONS_00029195
Biotype: transcript isomorph
Gene id: XLOC_013863
Gene Name: XLOC_013863
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Breast Normal/Primary
- Kidney Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
111-136
0.016
1
7mer
3721-3743
0.010
1
6mer
3733-3754
0.003
1
XLOC_005559
hsa-miR-128-3p
0.750
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012631
Biotype: transcript isomorph
Gene id: XLOC_005559
Gene Name: XLOC_005559
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Heart Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3679-3703
0.010
1
7mer
3652-3661
0.006
1
6mer
679-689
0.004
1
6mer
449-461
0.002
1
8mer
1469-1484
0.002
Not Conserved
6mer
160-180
0.002
0
6mer
2182-2194
0.001
0
6mer
3069-3084
0.001
Not Conserved
6mer
1469-1489
0.000
Not Conserved
TSNAX-DISC1
hsa-miR-128-3p
0.750
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_028394.1
Biotype: sense
Gene id: NR_028394.1 (gene)
Gene Name: TSNAX-DISC1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2917-2929
0.024
3
6mer
141-153
0.003
1
7mer
1150-1173
0.001
Not Conserved
6mer
1168-1182
0.001
2
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