LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-128-3p


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Gene
miRNA
Score
DIANA Links
RP11-34P13.14
hsa-miR-128-3p
0.757
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000493797
Biotype: antisense
Gene id: ENSG00000239906
Gene Name: RP11-34P13.14
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
151-176
0.029
0
BLOC1S5-TXNDC5
hsa-miR-128-3p
0.757
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: NR_037616.1
Biotype: sense
Gene id: NR_037616.1 (gene)
Gene Name: BLOC1S5-TXNDC5
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1673-1682
0.017
6
6mer
2747-2767
0.005
8
7mer
2223-2242
0.004
5
6mer
1423-1439
0.002
1
6mer
1332-1349
0.001
Not Conserved
XLOC_003840
hsa-miR-128-3p
0.757
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008388
Biotype: transcript isomorph
Gene id: XLOC_003840
Gene Name: XLOC_003840
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
- Lung Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1362-1383
0.015
0
7mer
1730-1746
0.010
1
6mer
1273-1299
0.003
1
6mer
373-391
0.001
Not Conserved
AC003973.4
hsa-miR-128-3p
0.757
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000596778
Biotype: lincRNA
Gene id: ENSG00000269504
Gene Name: AC003973.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
749-774
0.029
0
AC092159.3
hsa-miR-128-3p
0.757
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000439196
Biotype: antisense
Gene id: ENSG00000233970
Gene Name: AC092159.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
271-291
0.029
1
XLOC_006283
hsa-miR-128-3p
0.756
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00014228
Biotype: transcript isomorph
Gene id: XLOC_006283
Gene Name: XLOC_006283
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
750-775
0.023
2
7mer
484-509
0.006
2
RP11-753H16.5
hsa-miR-128-3p
0.756
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000552785
Biotype: antisense
Gene id: ENSG00000258086
Gene Name: RP11-753H16.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
510-531
0.029
0
CTD-2541M15.1
hsa-miR-128-3p
0.756
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000525186
Biotype: antisense
Gene id: ENSG00000249898
Gene Name: CTD-2541M15.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
145-163
0.022
1
7mer
593-602
0.007
0
LINC01098
hsa-miR-128-3p
0.755
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000507870
Biotype: lincRNA
Gene id: ENSG00000231171
Gene Name: LINC01098
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
286-298
0.019
Not Conserved
7mer
761-782
0.010
1
XLOC_013100
hsa-miR-128-3p
0.755
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027059
Biotype: transcript isomorph
Gene id: XLOC_013100
Gene Name: XLOC_013100
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Colon Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4055-4081
0.012
1
8mer
2471-2491
0.004
0
6mer
4075-4092
0.004
1
6mer
2282-2297
0.002
1
6mer
3863-3885
0.002
0
7mer
555-578
0.002
Not Conserved
6mer
1977-1993
0.002
1
6mer
1257-1272
0.001
0
RP11-173D3.1
hsa-miR-128-3p
0.755
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000553658
Biotype: lincRNA
Gene id: ENSG00000258410
Gene Name: RP11-173D3.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
192-210
0.029
0
RP11-169F17.1
hsa-miR-128-3p
0.755
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000583405
Biotype: retained_intron
Gene id: ENSG00000263711
Gene Name: RP11-169F17.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
430-448
0.029
0
RP3-405J10.3
hsa-miR-128-3p
0.755
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000552061
Biotype: sense_intronic
Gene id: ENSG00000257298
Gene Name: RP3-405J10.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
668-686
0.014
0
7mer
3796-3808
0.006
1
8mer
2229-2254
0.005
0
6mer
562-582
0.003
1
6mer
2394-2413
0.001
3
RP11-669N7.2
hsa-miR-128-3p
0.755
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000540739
Biotype: retained_intron
Gene id: ENSG00000249196
Gene Name: RP11-669N7.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
133-145
0.029
0
AC004448.5
hsa-miR-128-3p
0.755
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000610229
Biotype: lincRNA
Gene id: ENSG00000235979
Gene Name: AC004448.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
442-461
0.029
1
XLOC_001668
hsa-miR-128-3p
0.755
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003870
Biotype: transcript isomorph
Gene id: XLOC_001668
Gene Name: XLOC_001668
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2028-2040
0.014
1
7mer
4027-4044
0.006
0
6mer
3190-3211
0.005
1
6mer
1739-1761
0.004
1
TSNAX-DISC1
hsa-miR-128-3p
0.754
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_028396.1
Biotype: sense
Gene id: NR_028396.1 (gene)
Gene Name: TSNAX-DISC1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2789-2801
0.024
3
6mer
141-153
0.003
1
7mer
1022-1045
0.001
Not Conserved
6mer
1040-1054
0.001
2
AC008079.10
hsa-miR-128-3p
0.754
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623543
Biotype: antisense
Gene id: ENSG00000280007
Gene Name: AC008079.10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
12168-12186
0.009
0
6mer
15636-15662
0.003
8
7mer
9950-9967
0.003
0
8mer
6145-6163
0.002
1
7mer
9240-9264
0.002
0
6mer
2074-2082
0.001
1
6mer
4006-4027
0.001
0
6mer
11374-11390
0.001
2
6mer
8424-8450
0.001
0
6mer
11103-11121
0.001
2
6mer
7294-7309
0.001
0
6mer
4778-4796
0.001
0
6mer
4339-4357
0.001
0
6mer
3069-3082
0.001
0
6mer
11005-11031
0.000
1
6mer
11326-11352
0.000
0
6mer
11355-11374
0.000
0
MYCBP2-AS1
hsa-miR-128-3p
0.754
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000593933
Biotype: antisense
Gene id: ENSG00000236051
Gene Name: MYCBP2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
523-544
0.025
5
6mer
642-665
0.004
5
RP11-555K2.4
hsa-miR-128-3p
0.754
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000624226
Biotype: lincRNA
Gene id: ENSG00000279321
Gene Name: RP11-555K2.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
569-581
0.020
0
6mer
300-326
0.009
1
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