LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-128-3p


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Gene
miRNA
Score
DIANA Links
RP11-471B22.3
hsa-miR-128-3p
0.760
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000615251
Biotype: lincRNA
Gene id: ENSG00000275198
Gene Name: RP11-471B22.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4458-4479
0.010
0
8mer
3662-3678
0.006
2
6mer
3980-3999
0.004
2
7mer
2048-2066
0.003
0
6mer
1190-1217
0.002
2
6mer
3581-3599
0.002
1
6mer
1594-1610
0.002
1
6mer
1645-1660
0.001
1
SNHG23
hsa-miR-128-3p
0.760
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000414488
Biotype: lincRNA
Gene id: ENSG00000225746
Gene Name: SNHG23
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
78-93
0.024
Not Conserved
6mer
459-478
0.003
0
6mer
206-228
0.002
0
TAF1A-AS1
hsa-miR-128-3p
0.760
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000441835
Biotype: antisense
Gene id: ENSG00000225265
Gene Name: TAF1A-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
410-425
0.023
0
6mer
283-304
0.006
1
AP006222.2
hsa-miR-128-3p
0.760
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000448958
Biotype: lincRNA
Gene id: ENSG00000228463
Gene Name: AP006222.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
584-597
0.023
Not Conserved
6mer
1847-1868
0.005
0
6mer
545-561
0.002
Not Conserved
RP11-332H18.3
hsa-miR-128-3p
0.760
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000585495
Biotype: sense_intronic
Gene id: ENSG00000266934
Gene Name: RP11-332H18.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
203-213
0.027
4
6mer
530-550
0.003
1
RP11-129M16.4
hsa-miR-128-3p
0.759
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000614747
Biotype: antisense
Gene id: ENSG00000277879
Gene Name: RP11-129M16.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
140-159
0.029
0
AC139099.6
hsa-miR-128-3p
0.759
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000572850
Biotype: lincRNA
Gene id: ENSG00000262952
Gene Name: AC139099.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
248-266
0.029
0
LINC01105
hsa-miR-128-3p
0.759
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000431188
Biotype: lincRNA
Gene id: ENSG00000232044
Gene Name: LINC01105
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
133-155
0.029
1
RP11-1109M24.16
hsa-miR-128-3p
0.759
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000578977
Biotype: lincRNA
Gene id: ENSG00000263609
Gene Name: RP11-1109M24.16
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1059-1071
0.013
Not Conserved
6mer
172-189
0.007
0
6mer
930-946
0.005
0
6mer
757-774
0.004
0
CTD-2260A17.2
hsa-miR-128-3p
0.759
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000504056
Biotype: antisense
Gene id: ENSG00000247121
Gene Name: CTD-2260A17.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
24-39
0.024
2
6mer
263-276
0.006
2
XLOC_006825
hsa-miR-128-3p
0.759
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014742
Biotype: transcript isomorph
Gene id: XLOC_006825
Gene Name: XLOC_006825
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
330-354
0.029
2
LINC00649
hsa-miR-128-3p
0.758
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000609132
Biotype: antisense
Gene id: ENSG00000237945
Gene Name: LINC00649
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
25-37
0.029
1
LINC00635
hsa-miR-128-3p
0.758
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000488852
Biotype: lincRNA
Gene id: ENSG00000241469
Gene Name: LINC00635
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Kidney Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
336-356
0.029
6
LINC00969
hsa-miR-128-3p
0.758
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000601648
Biotype: lincRNA
Gene id: ENSG00000242086
Gene Name: LINC00969
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
204-224
0.025
Not Conserved
6mer
254-269
0.004
6
XLOC_005405
hsa-miR-128-3p
0.758
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011906
Biotype: transcript isomorph
Gene id: XLOC_005405
Gene Name: XLOC_005405
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
159-171
0.029
0
LOC285762
hsa-miR-128-3p
0.758
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: NR_046100.1
Biotype: lincRNA
Gene id: NR_046100.1 (gene)
Gene Name: LOC285762
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3181-3202
0.015
2
7mer
2893-2914
0.009
3
7mer
2882-2902
0.006
0
RP11-184D12.1
hsa-miR-128-3p
0.757
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000560886
Biotype: lincRNA
Gene id: ENSG00000259639
Gene Name: RP11-184D12.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
367-385
0.029
0
XLOC_002590
hsa-miR-128-3p
0.757
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006798
Biotype: transcript isomorph
Gene id: XLOC_002590
Gene Name: XLOC_002590
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
216-226
0.029
1
RAD51L3-RFFL
hsa-miR-128-3p
0.757
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: NR_037714.1
Biotype: sense
Gene id: NR_037714.1 (gene)
Gene Name: RAD51L3-RFFL
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3840-3858
0.008
0
7mer
3553-3578
0.008
3
6mer
3105-3117
0.006
13
6mer
2971-2989
0.004
10
7mer
3586-3605
0.003
4
AC097495.3
hsa-miR-128-3p
0.757
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000415448
Biotype: lincRNA
Gene id: ENSG00000228329
Gene Name: AC097495.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
945-963
0.029
2
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