LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-128-3p


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Gene
miRNA
Score
DIANA Links
XLOC_003199
hsa-miR-128-3p
0.769
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006575
Biotype: transcript isomorph
Gene id: XLOC_003199
Gene Name: XLOC_003199
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Colon Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
290-307
0.028
1
6mer
502-513
0.002
2
RP11-809F4.3
hsa-miR-128-3p
0.769
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000562617
Biotype: lincRNA
Gene id: ENSG00000260217
Gene Name: RP11-809F4.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1289-1308
0.019
0
6mer
139-150
0.011
1
RP11-597D13.8
hsa-miR-128-3p
0.769
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000513067
Biotype: antisense
Gene id: ENSG00000250604
Gene Name: RP11-597D13.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
69-91
0.027
1
6mer
186-208
0.003
1
XLOC_004197
hsa-miR-128-3p
0.769
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008681
Biotype: transcript isomorph
Gene id: XLOC_004197
Gene Name: XLOC_004197
UCSC graphic: -
Expression:
  Cell Line Tissue Category
Fibroblasts Foreskin Normal/Primary
- Kidney Normal/Primary
- Prostate Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
342-360
0.020
1
7mer
913-934
0.008
0
6mer
1337-1353
0.002
0
RP11-441F2.2
hsa-miR-128-3p
0.769
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000564074
Biotype: sense_intronic
Gene id: ENSG00000260198
Gene Name: RP11-441F2.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1627-1651
0.028
2
6mer
728-737
0.002
1
RP11-770E5.3
hsa-miR-128-3p
0.769
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000521660
Biotype: lincRNA
Gene id: ENSG00000253455
Gene Name: RP11-770E5.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
35-59
0.030
1
XLOC_014188
hsa-miR-128-3p
0.769
mTTBlnEmP

Gene Details
Chromosome: chr22
Transcript: TCONS_00029538
Biotype: transcript isomorph
Gene id: XLOC_014188
Gene Name: XLOC_014188
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
- Placenta Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
234-248
0.021
4
6mer
1947-1958
0.003
1
7mer
637-660
0.003
0
6mer
1100-1105
0.002
Not Conserved
6mer
2208-2227
0.002
Not Conserved
RP11-669N7.2
hsa-miR-128-3p
0.769
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000508925
Biotype: retained_intron
Gene id: ENSG00000249196
Gene Name: RP11-669N7.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
234-246
0.030
0
XLOC_002353
hsa-miR-128-3p
0.768
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004473
Biotype: transcript isomorph
Gene id: XLOC_002353
Gene Name: XLOC_002353
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Breast Normal/Primary
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1353-1380
0.023
2
6mer
1108-1131
0.004
1
6mer
752-762
0.003
Not Conserved
RP11-176D17.3
hsa-miR-128-3p
0.768
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000443622
Biotype: sense_overlapping
Gene id: ENSG00000228470
Gene Name: RP11-176D17.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
193-214
0.025
0
6mer
13-31
0.005
0
LINC01432
hsa-miR-128-3p
0.768
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000449427
Biotype: lincRNA
Gene id: ENSG00000234435
Gene Name: LINC01432
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
599-623
0.015
Not Conserved
7mer
638-652
0.015
1
XLOC_009124
hsa-miR-128-3p
0.768
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019298
Biotype: transcript isomorph
Gene id: XLOC_009124
Gene Name: XLOC_009124
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
768-775
0.015
3
7mer
541-558
0.008
1
7mer
2035-2053
0.008
1
RP11-78F17.1
hsa-miR-128-3p
0.768
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000581556
Biotype: lincRNA
Gene id: ENSG00000263551
Gene Name: RP11-78F17.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
101-120
0.021
Not Conserved
9mer
233-254
0.009
Not Conserved
XLOC_011306
hsa-miR-128-3p
0.768
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023266
Biotype: transcript isomorph
Gene id: XLOC_011306
Gene Name: XLOC_011306
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
736-763
0.022
1
6mer
987-1005
0.008
2
RP11-425D17.1
hsa-miR-128-3p
0.768
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000619739
Biotype: antisense
Gene id: ENSG00000278733
Gene Name: RP11-425D17.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
34-57
0.030
3
DNM3OS
hsa-miR-128-3p
0.768
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000417354
Biotype: antisense
Gene id: ENSG00000230630
Gene Name: DNM3OS
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
37-42
0.016
2
9mer
3143-3157
0.011
1
6mer
3484-3495
0.003
0
TOB1-AS1
hsa-miR-128-3p
0.768
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000416263
Biotype: antisense
Gene id: ENSG00000229980
Gene Name: TOB1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1252-1270
0.022
1
7mer
249-267
0.008
3
RP11-689B22.2
hsa-miR-128-3p
0.768
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000550306
Biotype: antisense
Gene id: ENSG00000257221
Gene Name: RP11-689B22.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
265-283
0.030
1
XLOC_002722
hsa-miR-128-3p
0.768
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006118
Biotype: transcript isomorph
Gene id: XLOC_002722
Gene Name: XLOC_002722
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Heart Normal/Primary
- Skeletal Muscle Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1013-1039
0.027
1
6mer
5405-5419
0.002
Not Conserved
6mer
5586-5602
0.001
0
CTD-3037G24.3
hsa-miR-128-3p
0.767
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000564505
Biotype: antisense
Gene id: ENSG00000259899
Gene Name: CTD-3037G24.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
333-355
0.030
0
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