LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-128-3p


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Gene
miRNA
Score
DIANA Links
LOC100506023
hsa-miR-128-3p
0.773
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_037845.1
Biotype: lincRNA
Gene id: NR_037845.1 (gene)
Gene Name: LOC100506023
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3634-3661
0.011
Not Conserved
8mer
5081-5098
0.010
0
7mer
1313-1334
0.005
2
6mer
286-308
0.002
0
7mer
4698-4721
0.002
0
6mer
1620-1629
0.001
0
XLOC_001707
hsa-miR-128-3p
0.773
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004918
Biotype: transcript isomorph
Gene id: XLOC_001707
Gene Name: XLOC_001707
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
456-480
0.018
1
7mer
1513-1518
0.013
1
CTD-2619J13.3
hsa-miR-128-3p
0.773
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000599889
Biotype: antisense
Gene id: ENSG00000269054
Gene Name: CTD-2619J13.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
563-582
0.028
1
6mer
224-240
0.003
0
LAMTOR5-AS1
hsa-miR-128-3p
0.773
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000608719
Biotype: antisense
Gene id: ENSG00000224699
Gene Name: LAMTOR5-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
187-201
0.031
0
RP11-373D23.2
hsa-miR-128-3p
0.773
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000604052
Biotype: sense_intronic
Gene id: ENSG00000270640
Gene Name: RP11-373D23.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
81-107
0.031
6
XLOC_000070
hsa-miR-128-3p
0.772
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000852
Biotype: transcript isomorph
Gene id: XLOC_000070
Gene Name: XLOC_000070
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Colon Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
429-443
0.014
2
8mer
925-940
0.013
1
6mer
321-334
0.003
1
AC068282.3
hsa-miR-128-3p
0.772
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000433673
Biotype: lincRNA
Gene id: ENSG00000236682
Gene Name: AC068282.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
201-227
0.016
0
7mer
2405-2415
0.008
0
6mer
489-512
0.003
1
6mer
621-633
0.002
1
6mer
1195-1219
0.001
0
6mer
1352-1376
0.001
1
bP-21264C1.2
hsa-miR-128-3p
0.772
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000624162
Biotype: lincRNA
Gene id: ENSG00000278932
Gene Name: bP-21264C1.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
178-203
0.024
0
6mer
323-345
0.007
0
RP13-653N12.1
hsa-miR-128-3p
0.772
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000540745
Biotype: lincRNA
Gene id: ENSG00000256551
Gene Name: RP13-653N12.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
56-74
0.027
Not Conserved
6mer
660-679
0.003
1
RP3-332B22.1
hsa-miR-128-3p
0.772
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000456896
Biotype: lincRNA
Gene id: ENSG00000236013
Gene Name: RP3-332B22.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
204-230
0.014
1
7mer
300-309
0.011
2
6mer
1141-1167
0.005
0
LAMTOR5-AS1
hsa-miR-128-3p
0.772
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000444238
Biotype: antisense
Gene id: ENSG00000224699
Gene Name: LAMTOR5-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
164-178
0.031
0
XLOC_005602
hsa-miR-128-3p
0.771
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011130
Biotype: transcript isomorph
Gene id: XLOC_005602
Gene Name: XLOC_005602
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1821-1838
0.017
1
7mer
3157-3172
0.008
2
6mer
470-482
0.005
2
6mer
2125-2141
0.002
1
RP1-287H17.1
hsa-miR-128-3p
0.771
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000447557
Biotype: lincRNA
Gene id: ENSG00000236389
Gene Name: RP1-287H17.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
200-215
0.017
0
6mer
821-848
0.007
3
6mer
209-220
0.003
0
6mer
216-231
0.003
1
AC005550.3
hsa-miR-128-3p
0.771
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000451240
Biotype: antisense
Gene id: ENSG00000237070
Gene Name: AC005550.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1685-1691
0.015
1
7mer
2276-2288
0.008
1
6mer
130-144
0.005
2
6mer
185-200
0.002
0
RP4-669L17.10
hsa-miR-128-3p
0.770
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: NR_028325.1
Biotype: lincRNA
Gene id: NR_028325.1 (gene)
Gene Name: RP4-669L17.10
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
52-77
0.015
Not Conserved
8mer
615-625
0.011
0
8mer
1534-1557
0.003
Not Conserved
7mer
1380-1399
0.002
Not Conserved
RP11-59J16.2
hsa-miR-128-3p
0.770
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000479610
Biotype: lincRNA
Gene id: ENSG00000240562
Gene Name: RP11-59J16.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
95-113
0.017
0
6mer
569-580
0.010
2
6mer
58-69
0.003
0
AC007161.5
hsa-miR-128-3p
0.770
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000418534
Biotype: lincRNA
Gene id: ENSG00000234718
Gene Name: AC007161.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
729-756
0.025
0
6mer
690-712
0.003
0
6mer
677-697
0.002
0
XLOC_008054
hsa-miR-128-3p
0.770
mTTBlnEmP

Gene Details
Chromosome: chrX
Transcript: TCONS_00017234
Biotype: transcript isomorph
Gene id: XLOC_008054
Gene Name: XLOC_008054
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
285-299
0.030
6
AC018737.3
hsa-miR-128-3p
0.769
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000422238
Biotype: lincRNA
Gene id: ENSG00000224655
Gene Name: AC018737.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
589-603
0.030
0
RP11-449D8.5
hsa-miR-128-3p
0.769
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000582650
Biotype: lincRNA
Gene id: ENSG00000266573
Gene Name: RP11-449D8.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
152-177
0.016
1
7mer
152-169
0.014
0
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