LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-128-3p


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Gene
miRNA
Score
DIANA Links
TSNAX-DISC1
hsa-miR-128-3p
0.776
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_028398.1
Biotype: sense
Gene id: NR_028398.1 (gene)
Gene Name: TSNAX-DISC1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2408-2420
0.025
3
6mer
141-153
0.003
1
7mer
641-664
0.002
Not Conserved
6mer
659-673
0.001
2
XLOC_002176
hsa-miR-128-3p
0.776
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004316
Biotype: transcript isomorph
Gene id: XLOC_002176
Gene Name: XLOC_002176
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
280-299
0.031
1
RP11-381N20.2
hsa-miR-128-3p
0.776
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000503950
Biotype: lincRNA
Gene id: ENSG00000249125
Gene Name: RP11-381N20.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
111-129
0.031
1
PRSS51
hsa-miR-128-3p
0.776
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000523024
Biotype: antisense
Gene id: ENSG00000253649
Gene Name: PRSS51
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
744-771
0.031
3
RRS1-AS1
hsa-miR-128-3p
0.776
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000499642
Biotype: lincRNA
Gene id: ENSG00000246145
Gene Name: RRS1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Breast Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2349-2370
0.009
2
7mer
2158-2170
0.008
2
6mer
4180-4199
0.005
1
7mer
3398-3408
0.003
1
6mer
1190-1200
0.002
3
6mer
1782-1793
0.002
2
6mer
789-809
0.002
1
6mer
2092-2105
0.001
0
LINC01240
hsa-miR-128-3p
0.776
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000602434
Biotype: lincRNA
Gene id: ENSG00000270109
Gene Name: LINC01240
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
255-275
0.031
1
LINC00964
hsa-miR-128-3p
0.776
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: NR_027321.1
Biotype: lincRNA
Gene id: NR_027321.1 (gene)
Gene Name: LINC00964
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
495-512
0.015
1
6mer
3430-3446
0.005
3
6mer
3540-3550
0.004
1
6mer
2916-2922
0.003
1
6mer
675-694
0.003
0
6mer
1539-1552
0.001
0
LAMTOR5-AS1
hsa-miR-128-3p
0.776
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000608635
Biotype: antisense
Gene id: ENSG00000224699
Gene Name: LAMTOR5-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
126-140
0.031
0
XLOC_013742
hsa-miR-128-3p
0.776
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028387
Biotype: transcript isomorph
Gene id: XLOC_013742
Gene Name: XLOC_013742
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
101-117
0.029
1
6mer
1017-1031
0.002
1
XLOC_000283
hsa-miR-128-3p
0.775
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001018
Biotype: transcript isomorph
Gene id: XLOC_000283
Gene Name: XLOC_000283
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Breast Normal/Primary
- Ovary Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
433-455
0.031
1
LINC01355
hsa-miR-128-3p
0.775
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000604481
Biotype: lincRNA
Gene id: ENSG00000261326
Gene Name: LINC01355
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
345-369
0.031
0
LINC00894
hsa-miR-128-3p
0.775
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000455777
Biotype: antisense
Gene id: ENSG00000235703
Gene Name: LINC00894
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
33-58
0.031
1
XLOC_011949
hsa-miR-128-3p
0.775
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024661
Biotype: transcript isomorph
Gene id: XLOC_011949
Gene Name: XLOC_011949
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
- Ovary Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1074-1089
0.027
8
6mer
1542-1551
0.004
2
RP11-614F17.2
hsa-miR-128-3p
0.774
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000514222
Biotype: lincRNA
Gene id: ENSG00000251676
Gene Name: RP11-614F17.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
415-427
0.021
0
6mer
56-82
0.010
1
LINC00969
hsa-miR-128-3p
0.774
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000414625
Biotype: lincRNA
Gene id: ENSG00000242086
Gene Name: LINC00969
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
167-187
0.026
Not Conserved
6mer
217-232
0.005
6
RP11-567I13.1
hsa-miR-128-3p
0.774
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000526867
Biotype: antisense
Gene id: ENSG00000255351
Gene Name: RP11-567I13.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
445-464
0.019
Not Conserved
7mer
499-521
0.009
Not Conserved
6mer
233-253
0.003
0
RP5-898I4.1
hsa-miR-128-3p
0.774
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623740
Biotype: sense_overlapping
Gene id: ENSG00000280395
Gene Name: RP5-898I4.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1840-1858
0.012
0
8mer
950-968
0.007
0
7mer
2403-2423
0.005
0
6mer
603-620
0.005
0
6mer
1260-1286
0.001
0
LINC00996
hsa-miR-128-3p
0.774
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000477392
Biotype: lincRNA
Gene id: ENSG00000242258
Gene Name: LINC00996
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1653-1676
0.018
1
7mer
1146-1166
0.007
1
6mer
24-43
0.005
1
RASSF8-AS1
hsa-miR-128-3p
0.773
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000500102
Biotype: antisense
Gene id: ENSG00000246695
Gene Name: RASSF8-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
198-215
0.023
0
7mer
215-230
0.008
1
XLOC_011595
hsa-miR-128-3p
0.773
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023815
Biotype: transcript isomorph
Gene id: XLOC_011595
Gene Name: XLOC_011595
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
134-146
0.031
0
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