LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-128-3p


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Gene
miRNA
Score
DIANA Links
RP11-1134I14.8
hsa-miR-128-3p
0.780
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000528139
Biotype: lincRNA
Gene id: ENSG00000255366
Gene Name: RP11-1134I14.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
152-167
0.016
1
7mer
709-733
0.014
1
6mer
838-855
0.001
1
XLOC_004896
hsa-miR-128-3p
0.779
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00009291
Biotype: transcript isomorph
Gene id: XLOC_004896
Gene Name: XLOC_004896
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
673-697
0.022
2
6mer
83-95
0.006
0
6mer
290-309
0.004
4
RP11-421L21.3
hsa-miR-128-3p
0.778
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000451213
Biotype: retained_intron
Gene id: ENSG00000233184
Gene Name: RP11-421L21.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1007-1023
0.025
2
6mer
821-839
0.003
1
6mer
1226-1252
0.003
1
RP11-54A9.1
hsa-miR-128-3p
0.778
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000553247
Biotype: lincRNA
Gene id: ENSG00000257219
Gene Name: RP11-54A9.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1068-1079
0.023
0
6mer
697-715
0.006
1
6mer
134-161
0.002
Not Conserved
TMEM254-AS1
hsa-miR-128-3p
0.778
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000448729
Biotype: antisense
Gene id: ENSG00000230091
Gene Name: TMEM254-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1808-1823
0.020
3
7mer
268-292
0.005
0
6mer
1193-1209
0.003
0
6mer
621-634
0.002
0
6mer
488-501
0.002
0
RP11-79E3.2
hsa-miR-128-3p
0.778
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000515733
Biotype: lincRNA
Gene id: ENSG00000250723
Gene Name: RP11-79E3.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
206-229
0.015
0
7mer
306-329
0.011
1
6mer
186-197
0.004
1
RP11-687F6.1
hsa-miR-128-3p
0.778
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000586478
Biotype: lincRNA
Gene id: ENSG00000267167
Gene Name: RP11-687F6.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
452-461
0.027
0
6mer
581-596
0.004
1
XLOC_005784
hsa-miR-128-3p
0.778
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012226
Biotype: transcript isomorph
Gene id: XLOC_005784
Gene Name: XLOC_005784
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
668-682
0.023
1
6mer
65-76
0.004
1
6mer
2049-2067
0.004
0
RP1-178F15.4
hsa-miR-128-3p
0.777
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000469931
Biotype: antisense
Gene id: ENSG00000272030
Gene Name: RP1-178F15.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
142-166
0.027
6
8mer+wobble
480-498
0.004
0
XLOC_013496
hsa-miR-128-3p
0.777
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028138
Biotype: transcript isomorph
Gene id: XLOC_013496
Gene Name: XLOC_013496
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
987-1013
0.031
1
RP11-91J3.3
hsa-miR-128-3p
0.777
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000503677
Biotype: lincRNA
Gene id: ENSG00000250620
Gene Name: RP11-91J3.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
357-375
0.031
6
LINC00635
hsa-miR-128-3p
0.777
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: NR_015414.1
Biotype: lincRNA
Gene id: NR_015414.1 (gene)
Gene Name: LINC00635
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
336-356
0.031
6
XLOC_006335
hsa-miR-128-3p
0.777
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013117
Biotype: transcript isomorph
Gene id: XLOC_006335
Gene Name: XLOC_006335
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
- Lung Normal/Primary
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3089-3107
0.023
1
7mer
475-494
0.004
0
6mer
1019-1029
0.002
2
6mer
1684-1708
0.002
0
ZNF295-AS1
hsa-miR-128-3p
0.777
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000429739
Biotype: lincRNA
Gene id: ENSG00000237232
Gene Name: ZNF295-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
693-715
0.028
0
6mer
373-388
0.003
0
XLOC_009631
hsa-miR-128-3p
0.777
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020230
Biotype: transcript isomorph
Gene id: XLOC_009631
Gene Name: XLOC_009631
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
- Thyroid Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
198-216
0.029
0
6mer
826-846
0.003
1
XLOC_009445
hsa-miR-128-3p
0.777
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019641
Biotype: transcript isomorph
Gene id: XLOC_009445
Gene Name: XLOC_009445
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
5272-5287
0.022
0
7mer
4508-4520
0.004
0
7mer
3143-3169
0.002
0
6mer
3217-3229
0.002
0
6mer
1397-1413
0.001
0
CTD-2515A14.1
hsa-miR-128-3p
0.777
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000568895
Biotype: antisense
Gene id: ENSG00000261669
Gene Name: CTD-2515A14.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
44-53
0.031
1
AC008937.2
hsa-miR-128-3p
0.777
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000415589
Biotype: antisense
Gene id: ENSG00000237705
Gene Name: AC008937.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
477-496
0.031
5
KB-1184D12.1
hsa-miR-128-3p
0.777
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000522743
Biotype: lincRNA
Gene id: ENSG00000253585
Gene Name: KB-1184D12.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
257-270
0.031
0
RP11-15E1.5
hsa-miR-128-3p
0.776
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000619851
Biotype: lincRNA
Gene id: ENSG00000274893
Gene Name: RP11-15E1.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2134-2147
0.019
0
8mer
104-119
0.008
Not Conserved
6mer
648-667
0.004
0
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