LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-128-3p


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Gene
miRNA
Score
DIANA Links
RP1-101G11.3
hsa-miR-128-3p
0.784
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624442
Biotype: lincRNA
Gene id: ENSG00000280356
Gene Name: RP1-101G11.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2402-2417
0.010
2
7mer
10123-10139
0.007
2
6mer
10353-10373
0.005
5
7mer
4962-4974
0.004
1
7mer
1353-1366
0.003
0
6mer
4607-4619
0.001
1
6mer
6822-6840
0.001
1
6mer
5904-5918
0.001
0
XLOC_008695
hsa-miR-128-3p
0.784
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018413
Biotype: transcript isomorph
Gene id: XLOC_008695
Gene Name: XLOC_008695
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1647-1666
0.018
1
7mer
486-498
0.009
0
6mer
2187-2214
0.003
1
6mer
1792-1811
0.002
0
CTD-2516F10.2
hsa-miR-128-3p
0.783
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000622955
Biotype: antisense
Gene id: ENSG00000251364
Gene Name: CTD-2516F10.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
596-610
0.016
1
7mer
856-877
0.008
1
6mer
647-663
0.003
1
6mer
2383-2409
0.002
1
6mer
1531-1558
0.002
0
RP11-169F17.1
hsa-miR-128-3p
0.783
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000582571
Biotype: lincRNA
Gene id: ENSG00000263711
Gene Name: RP11-169F17.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
671-689
0.032
0
CASC7
hsa-miR-128-3p
0.783
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000560295
Biotype: lincRNA
Gene id: ENSG00000259758
Gene Name: CASC7
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
681-697
0.008
0
7mer
4319-4333
0.007
5
7mer
6346-6366
0.006
7
7mer
5671-5682
0.004
1
7mer
3615-3629
0.002
1
7mer
7754-7774
0.001
1
6mer
2455-2479
0.001
1
6mer
1864-1878
0.001
0
6mer
7424-7442
0.001
1
6mer
6316-6340
0.000
0
AC108066.1
hsa-miR-128-3p
0.782
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000437261
Biotype: lincRNA
Gene id: ENSG00000223373
Gene Name: AC108066.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
273-282
0.032
3
AC093390.1
hsa-miR-128-3p
0.782
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000426976
Biotype: antisense
Gene id: ENSG00000232057
Gene Name: AC093390.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3279-3295
0.018
0
7mer
3093-3111
0.008
1
6mer
112-135
0.003
0
6mer
143-157
0.002
1
LINC01184
hsa-miR-128-3p
0.782
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000501702
Biotype: lincRNA
Gene id: ENSG00000245937
Gene Name: LINC01184
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2737-2743
0.027
0
6mer
332-354
0.003
3
6mer
1318-1344
0.002
0
KANSL1-AS1
hsa-miR-128-3p
0.782
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000572973
Biotype: antisense
Gene id: ENSG00000214401
Gene Name: KANSL1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
299-311
0.018
3
7mer
224-242
0.014
2
ARL2-SNX15
hsa-miR-128-3p
0.782
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: NR_037650.1
Biotype: sense
Gene id: NR_037650.1 (gene)
Gene Name: ARL2-SNX15
UCSC graphic: -
Expression:
  Cell Line Tissue Category
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
954-977
0.014
2
7mer
1204-1231
0.006
2
6mer
2376-2380
0.006
3
6mer
2320-2327
0.005
1
XLOC_005421
hsa-miR-128-3p
0.782
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011186
Biotype: transcript isomorph
Gene id: XLOC_005421
Gene Name: XLOC_005421
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Heart Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1745-1757
0.014
6
7mer
1091-1107
0.008
2
7mer
1433-1446
0.004
1
6mer
26-38
0.003
0
6mer
2753-2772
0.003
2
6mer
1189-1207
0.001
1
RP11-638I2.9
hsa-miR-128-3p
0.781
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000556212
Biotype: antisense
Gene id: ENSG00000258521
Gene Name: RP11-638I2.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
456-471
0.020
1
8mer
497-516
0.012
0
STL
hsa-miR-128-3p
0.781
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: NR_026876.1
Biotype: antisense
Gene id: NR_026876.1 (gene)
Gene Name: STL
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
86-106
0.029
1
6mer
4628-4647
0.003
1
RP3-467K16.2
hsa-miR-128-3p
0.781
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000428747
Biotype: antisense
Gene id: ENSG00000233485
Gene Name: RP3-467K16.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
26-44
0.032
4
RFPL1S
hsa-miR-128-3p
0.781
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000539579
Biotype: pseudogene
Gene id: ENSG00000225465
Gene Name: RFPL1S
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
189-205
0.031
0
XLOC_000111
hsa-miR-128-3p
0.781
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000873
Biotype: transcript isomorph
Gene id: XLOC_000111
Gene Name: XLOC_000111
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
349-364
0.031
1
XLOC_009813
hsa-miR-128-3p
0.781
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020482
Biotype: transcript isomorph
Gene id: XLOC_009813
Gene Name: XLOC_009813
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
515-526
0.019
5
7mer
1406-1421
0.011
1
6mer
1095-1119
0.002
1
XLOC_003704
hsa-miR-128-3p
0.780
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008261
Biotype: transcript isomorph
Gene id: XLOC_003704
Gene Name: XLOC_003704
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Breast Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1772-1796
0.021
1
7mer
553-577
0.011
0
AC006019.4
hsa-miR-128-3p
0.780
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000451116
Biotype: antisense
Gene id: ENSG00000233363
Gene Name: AC006019.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2087-2098
0.012
1
7mer
105-129
0.008
0
7mer
2902-2929
0.004
Not Conserved
6mer
115-129
0.003
0
7mer
1516-1535
0.002
0
6mer
1211-1230
0.001
1
LINC00649
hsa-miR-128-3p
0.780
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000596365
Biotype: antisense
Gene id: ENSG00000237945
Gene Name: LINC00649
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
639-651
0.031
1
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