LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-128-3p


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Gene
miRNA
Score
DIANA Links
XLOC_012859
hsa-miR-128-3p
0.786
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026536
Biotype: transcript isomorph
Gene id: XLOC_012859
Gene Name: XLOC_012859
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
552-577
0.032
0
PTPRD-AS1
hsa-miR-128-3p
0.786
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000430766
Biotype: lincRNA
Gene id: ENSG00000225706
Gene Name: PTPRD-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
625-635
0.025
1
6mer
1269-1287
0.004
3
6mer
208-234
0.002
1
AC097467.2
hsa-miR-128-3p
0.786
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000599555
Biotype: antisense
Gene id: ENSG00000250910
Gene Name: AC097467.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1162-1182
0.028
1
6mer
241-259
0.004
Not Conserved
AC006007.1
hsa-miR-128-3p
0.786
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000422084
Biotype: lincRNA
Gene id: ENSG00000230746
Gene Name: AC006007.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Colon Normal/Primary
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
569-594
0.032
0
RP4-781K5.5
hsa-miR-128-3p
0.786
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000441360
Biotype: lincRNA
Gene id: ENSG00000241475
Gene Name: RP4-781K5.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
790-809
0.017
0
7mer
888-902
0.013
1
6mer
583-594
0.003
1
SNHG23
hsa-miR-128-3p
0.786
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000434716
Biotype: lincRNA
Gene id: ENSG00000225746
Gene Name: SNHG23
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
31-46
0.026
Not Conserved
6mer
412-431
0.003
0
6mer
159-181
0.002
0
XLOC_002063
hsa-miR-128-3p
0.786
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004219
Biotype: transcript isomorph
Gene id: XLOC_002063
Gene Name: XLOC_002063
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
583-608
0.018
1
7mer
157-170
0.014
3
SHANK3
hsa-miR-128-3p
0.786
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000414786
Biotype: processed_transcript
Gene id: ENSG00000251322
Gene Name: SHANK3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4644-4664
0.010
8
8mer
6719-6744
0.009
1
7mer
783-794
0.005
6
7mer
3246-3268
0.003
3
6mer
4008-4034
0.002
4
6mer
6457-6471
0.002
Not Conserved
6mer
2164-2177
0.001
3
6mer
902-927
0.001
4
CTD-2022H16.1
hsa-miR-128-3p
0.785
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000421447
Biotype: lincRNA
Gene id: ENSG00000229389
Gene Name: CTD-2022H16.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
456-483
0.022
Not Conserved
7mer
28-42
0.010
1
LINC01184
hsa-miR-128-3p
0.785
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: NR_015360.1
Biotype: lincRNA
Gene id: NR_015360.1 (gene)
Gene Name: LINC01184
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2714-2720
0.027
0
6mer
309-331
0.003
3
6mer
1295-1321
0.002
0
AC005304.1
hsa-miR-128-3p
0.785
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000457609
Biotype: lincRNA
Gene id: ENSG00000233852
Gene Name: AC005304.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
269-282
0.032
1
RP11-352B15.2
hsa-miR-128-3p
0.785
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000564385
Biotype: lincRNA
Gene id: ENSG00000260611
Gene Name: RP11-352B15.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
495-512
0.011
0
6mer
1031-1048
0.011
0
6mer
876-902
0.010
0
XLOC_013363
hsa-miR-128-3p
0.785
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00026818
Biotype: transcript isomorph
Gene id: XLOC_013363
Gene Name: XLOC_013363
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
31-58
0.017
0
7mer
779-802
0.007
0
6mer
2084-2092
0.003
0
6mer
379-397
0.003
0
6mer
839-862
0.002
0
RP11-448G15.3
hsa-miR-128-3p
0.785
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000561486
Biotype: sense_overlapping
Gene id: ENSG00000261490
Gene Name: RP11-448G15.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
728-743
0.019
1
6mer
3452-3465
0.004
0
6mer
359-375
0.004
2
6mer
670-680
0.003
1
6mer
1687-1708
0.002
1
RP11-60L3.2
hsa-miR-128-3p
0.785
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000562561
Biotype: sense_intronic
Gene id: ENSG00000261384
Gene Name: RP11-60L3.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
312-332
0.032
1
HNF1A-AS1
hsa-miR-128-3p
0.784
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000539163
Biotype: retained_intron
Gene id: ENSG00000241388
Gene Name: HNF1A-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2074-2097
0.022
0
7mer
629-647
0.006
0
6mer
675-686
0.003
1
RP1-101D8.1
hsa-miR-128-3p
0.784
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000617854
Biotype: antisense
Gene id: ENSG00000275139
Gene Name: RP1-101D8.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
440-458
0.021
1
7mer
1334-1357
0.008
1
6mer
3562-3584
0.003
1
6mer
2414-2437
0.001
0
XLOC_007438
hsa-miR-128-3p
0.784
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00015577
Biotype: transcript isomorph
Gene id: XLOC_007438
Gene Name: XLOC_007438
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
6193-6213
0.019
1
7mer
5819-5840
0.010
0
6mer
2187-2204
0.001
1
6mer
1197-1212
0.001
1
ADAM20P1
hsa-miR-128-3p
0.784
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000320746
Biotype: pseudogene
Gene id: ENSG00000259158
Gene Name: ADAM20P1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
615-628
0.017
4
6mer
417-443
0.008
8
6mer
780-800
0.007
8
RP11-340I6.7
hsa-miR-128-3p
0.784
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000600182
Biotype: lincRNA
Gene id: ENSG00000236299
Gene Name: RP11-340I6.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
667-692
0.013
0
6mer
639-664
0.011
0
6mer
537-552
0.008
0
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