LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-128-3p


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Gene
miRNA
Score
DIANA Links
LINC00964
hsa-miR-128-3p
0.791
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000510897
Biotype: lincRNA
Gene id: ENSG00000249816
Gene Name: LINC00964
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
448-465
0.016
1
6mer
3383-3399
0.005
3
6mer
3493-3503
0.005
1
6mer
2869-2875
0.003
1
6mer
628-647
0.003
0
6mer
1492-1505
0.001
0
MIR4458HG
hsa-miR-128-3p
0.791
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000606459
Biotype: lincRNA
Gene id: ENSG00000247516
Gene Name: MIR4458HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3015-3031
0.020
0
7mer
2630-2640
0.010
0
6mer
381-392
0.002
Not Conserved
CTD-2516F10.2
hsa-miR-128-3p
0.791
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000514126
Biotype: antisense
Gene id: ENSG00000251364
Gene Name: CTD-2516F10.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
596-610
0.028
1
6mer
647-663
0.004
1
CTD-2036A18.2
hsa-miR-128-3p
0.790
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000504046
Biotype: lincRNA
Gene id: ENSG00000249153
Gene Name: CTD-2036A18.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
644-663
0.028
1
6mer
42-53
0.005
0
RP11-94L15.2
hsa-miR-128-3p
0.790
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000488188
Biotype: lincRNA
Gene id: ENSG00000264198
Gene Name: RP11-94L15.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
169-187
0.011
1
6mer
526-553
0.008
9
7mer
3086-3101
0.007
4
8mer
3496-3506
0.003
0
6mer
1826-1843
0.002
2
6mer
944-953
0.002
1
LAMTOR5-AS1
hsa-miR-128-3p
0.790
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000608077
Biotype: antisense
Gene id: ENSG00000224699
Gene Name: LAMTOR5-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
365-379
0.032
0
RP11-140I24.1
hsa-miR-128-3p
0.789
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000555721
Biotype: lincRNA
Gene id: ENSG00000258779
Gene Name: RP11-140I24.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1175-1186
0.025
1
6mer
325-329
0.004
1
7mer
542-557
0.003
0
SHANK3
hsa-miR-128-3p
0.789
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000262795
Biotype: processed_transcript
Gene id: ENSG00000251322
Gene Name: SHANK3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
6504-6529
0.009
1
7mer
4456-4476
0.009
8
7mer
556-567
0.006
6
7mer
3058-3080
0.003
3
6mer
6242-6256
0.002
Not Conserved
6mer
675-700
0.001
4
6mer
1976-1989
0.001
3
6mer
3820-3846
0.001
4
CTB-113D17.1
hsa-miR-128-3p
0.789
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000609389
Biotype: antisense
Gene id: ENSG00000272568
Gene Name: CTB-113D17.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2552-2570
0.013
1
8mer
2230-2252
0.013
3
6mer
2971-2985
0.003
1
6mer
1024-1047
0.003
2
XLOC_012303
hsa-miR-128-3p
0.789
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025482
Biotype: transcript isomorph
Gene id: XLOC_012303
Gene Name: XLOC_012303
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
851-873
0.032
1
RP11-169F17.1
hsa-miR-128-3p
0.788
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000584671
Biotype: retained_intron
Gene id: ENSG00000263711
Gene Name: RP11-169F17.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
483-501
0.032
0
RP11-493E12.1
hsa-miR-128-3p
0.788
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000606876
Biotype: lincRNA
Gene id: ENSG00000271889
Gene Name: RP11-493E12.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
127-146
0.032
1
XLOC_004182
hsa-miR-128-3p
0.788
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008667
Biotype: transcript isomorph
Gene id: XLOC_004182
Gene Name: XLOC_004182
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
- Testes Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
791-810
0.020
Not Conserved
8mer
471-486
0.012
0
TMEM254-AS1
hsa-miR-128-3p
0.788
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: NR_027431.2
Biotype: antisense
Gene id: NR_027431.2 (gene)
Gene Name: TMEM254-AS1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3369-3384
0.013
3
7mer
3773-3797
0.008
1
7mer
1271-1285
0.004
1
7mer
1742-1766
0.002
0
6mer
2667-2683
0.002
0
6mer
2095-2108
0.001
0
6mer
3474-3490
0.001
Not Conserved
6mer
1962-1975
0.001
0
RP11-2B6.2
hsa-miR-128-3p
0.788
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000602652
Biotype: lincRNA
Gene id: ENSG00000269929
Gene Name: RP11-2B6.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
877-889
0.020
1
7mer
996-1002
0.006
1
7mer
305-320
0.006
2
LINC00963
hsa-miR-128-3p
0.788
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000608272
Biotype: lincRNA
Gene id: ENSG00000204054
Gene Name: LINC00963
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
527-545
0.032
1
TMEM254-AS1
hsa-miR-128-3p
0.787
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: NR_027430.1
Biotype: antisense
Gene id: NR_027430.1 (gene)
Gene Name: TMEM254-AS1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3395-3410
0.013
3
7mer
3799-3823
0.008
1
7mer
1271-1285
0.004
1
7mer
1742-1766
0.002
0
6mer
2667-2683
0.002
0
6mer
2095-2108
0.001
0
6mer
3500-3516
0.001
Not Conserved
6mer
1962-1975
0.001
0
XLOC_014318
hsa-miR-128-3p
0.787
mTTBlnEmP

Gene Details
Chromosome: chr22
Transcript: TCONS_00029658
Biotype: transcript isomorph
Gene id: XLOC_014318
Gene Name: XLOC_014318
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Colon Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
106-126
0.032
0
RP11-140I24.1
hsa-miR-128-3p
0.787
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000561875
Biotype: lincRNA
Gene id: ENSG00000258779
Gene Name: RP11-140I24.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
222-239
0.027
0
6mer
67-71
0.005
1
RP11-848P1.2
hsa-miR-128-3p
0.786
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000580979
Biotype: sense_intronic
Gene id: ENSG00000264456
Gene Name: RP11-848P1.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1405-1430
0.032
0
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