LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-128-3p


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Gene
miRNA
Score
DIANA Links
RP11-465N4.4
hsa-miR-128-3p
0.794
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000415582
Biotype: antisense
Gene id: ENSG00000234678
Gene Name: RP11-465N4.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
307-324
0.033
0
CTC-529P8.1
hsa-miR-128-3p
0.794
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000507318
Biotype: lincRNA
Gene id: ENSG00000250072
Gene Name: CTC-529P8.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2714-2736
0.019
1
7mer
187-209
0.012
0
6mer
1528-1544
0.002
2
KCNQ5-AS1
hsa-miR-128-3p
0.794
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000429832
Biotype: antisense
Gene id: ENSG00000229154
Gene Name: KCNQ5-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
242-263
0.018
1
7mer
495-508
0.011
1
6mer
825-844
0.004
3
XLOC_013274
hsa-miR-128-3p
0.794
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027238
Biotype: transcript isomorph
Gene id: XLOC_013274
Gene Name: XLOC_013274
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
6580-6607
0.012
1
6mer
617-641
0.009
1
7mer
5918-5933
0.006
0
6mer
1774-1798
0.004
1
6mer
1736-1762
0.001
0
RP11-309H21.3
hsa-miR-128-3p
0.793
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000563320
Biotype: lincRNA
Gene id: ENSG00000261642
Gene Name: RP11-309H21.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
2612-2623
0.015
0
6mer
2890-2901
0.013
0
6mer
1779-1799
0.005
0
RP11-799B12.4
hsa-miR-128-3p
0.793
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000583267
Biotype: lincRNA
Gene id: ENSG00000265750
Gene Name: RP11-799B12.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
270-284
0.022
4
6mer
120-138
0.011
8
RP4-694A7.2
hsa-miR-128-3p
0.793
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000425820
Biotype: antisense
Gene id: ENSG00000233589
Gene Name: RP4-694A7.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
281-302
0.026
9
6mer
236-255
0.007
6
RP11-219B17.1
hsa-miR-128-3p
0.793
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000559824
Biotype: antisense
Gene id: ENSG00000245534
Gene Name: RP11-219B17.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
415-428
0.033
0
CTD-2213F21.2
hsa-miR-128-3p
0.793
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000502430
Biotype: antisense
Gene id: ENSG00000250365
Gene Name: CTD-2213F21.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
366-372
0.020
4
7mer
185-211
0.006
0
7mer
716-731
0.004
Not Conserved
6mer
434-447
0.003
2
RP11-538C21.2
hsa-miR-128-3p
0.793
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000615202
Biotype: lincRNA
Gene id: ENSG00000277448
Gene Name: RP11-538C21.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
375-393
0.030
0
6mer
1358-1384
0.003
1
XLOC_007668
hsa-miR-128-3p
0.793
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00015561
Biotype: transcript isomorph
Gene id: XLOC_007668
Gene Name: XLOC_007668
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
332-350
0.033
0
RP11-196G18.22
hsa-miR-128-3p
0.793
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000564237
Biotype: sense_overlapping
Gene id: ENSG00000261716
Gene Name: RP11-196G18.22
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4146-4162
0.012
0
7mer
4397-4417
0.008
0
8mer
1111-1121
0.005
0
6mer
4404-4415
0.004
0
6mer
2784-2797
0.002
0
6mer
1187-1212
0.001
0
RP11-644F5.11
hsa-miR-128-3p
0.792
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000552576
Biotype: antisense
Gene id: ENSG00000258056
Gene Name: RP11-644F5.11
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
971-995
0.024
0
6mer
1128-1146
0.004
0
6mer
396-404
0.004
1
ADAMTS9-AS1
hsa-miR-128-3p
0.792
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000601022
Biotype: antisense
Gene id: ENSG00000241158
Gene Name: ADAMTS9-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
271-297
0.021
1
7mer
105-127
0.012
1
LINC01140
hsa-miR-128-3p
0.792
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000590653
Biotype: lincRNA
Gene id: ENSG00000267272
Gene Name: LINC01140
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2370-2396
0.014
0
7mer
811-823
0.008
3
6mer
2904-2924
0.007
7
6mer
1896-1905
0.003
6
6mer
841-854
0.001
1
CTC-366B18.2
hsa-miR-128-3p
0.792
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000511329
Biotype: antisense
Gene id: ENSG00000248881
Gene Name: CTC-366B18.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
39-51
0.033
3
AP000290.7
hsa-miR-128-3p
0.792
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000450830
Biotype: antisense
Gene id: ENSG00000226433
Gene Name: AP000290.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
220-240
0.033
1
LINC01125
hsa-miR-128-3p
0.791
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000445382
Biotype: antisense
Gene id: ENSG00000228486
Gene Name: LINC01125
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
177-197
0.032
0
RP11-142C4.6
hsa-miR-128-3p
0.791
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000525714
Biotype: antisense
Gene id: ENSG00000255240
Gene Name: RP11-142C4.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
63-72
0.016
0
7mer
823-844
0.006
0
6mer
312-323
0.006
1
6mer
617-625
0.005
0
CTD-3074O7.5
hsa-miR-128-3p
0.791
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000527274
Biotype: antisense
Gene id: ENSG00000255517
Gene Name: CTD-3074O7.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
157-175
0.032
1
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