LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-128-3p


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Gene
miRNA
Score
DIANA Links
LINC01320
hsa-miR-128-3p
0.798
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000607437
Biotype: lincRNA
Gene id: ENSG00000228262
Gene Name: LINC01320
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
71-89
0.029
0
6mer
263-280
0.004
3
LINC01002
hsa-miR-128-3p
0.797
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000622667
Biotype: lincRNA
Gene id: ENSG00000206082
Gene Name: LINC01002
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
14-24
0.020
0
8mer
562-587
0.013
Not Conserved
AE000661.37
hsa-miR-128-3p
0.797
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000514473
Biotype: antisense
Gene id: ENSG00000251002
Gene Name: AE000661.37
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1805-1814
0.031
7
6mer
767-789
0.003
1
XLOC_002743
hsa-miR-128-3p
0.797
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006923
Biotype: transcript isomorph
Gene id: XLOC_002743
Gene Name: XLOC_002743
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
727-734
0.033
0
CTB-50L17.5
hsa-miR-128-3p
0.797
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000590159
Biotype: antisense
Gene id: ENSG00000267255
Gene Name: CTB-50L17.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
89-115
0.021
7
8mer
159-172
0.009
0
6mer
129-154
0.002
0
KCNMA1-AS3
hsa-miR-128-3p
0.797
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000418515
Biotype: antisense
Gene id: ENSG00000225652
Gene Name: KCNMA1-AS3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
493-510
0.017
1
8mer
220-246
0.016
0
LARS2-AS1
hsa-miR-128-3p
0.797
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000442534
Biotype: antisense
Gene id: ENSG00000232455
Gene Name: LARS2-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
193-216
0.033
1
RP11-805F19.2
hsa-miR-128-3p
0.797
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000583946
Biotype: lincRNA
Gene id: ENSG00000263635
Gene Name: RP11-805F19.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
134-145
0.033
0
XLOC_005212
hsa-miR-128-3p
0.796
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011164
Biotype: transcript isomorph
Gene id: XLOC_005212
Gene Name: XLOC_005212
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2840-2855
0.018
3
7mer
2410-2434
0.007
1
6mer
219-239
0.006
1
6mer
1167-1182
0.002
1
RP11-540K16.1
hsa-miR-128-3p
0.796
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000435023
Biotype: lincRNA
Gene id: ENSG00000237292
Gene Name: RP11-540K16.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
13-29
0.028
0
6mer
374-399
0.005
0
PCED1B-AS1
hsa-miR-128-3p
0.796
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000500365
Biotype: retained_intron
Gene id: ENSG00000247774
Gene Name: PCED1B-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
579-585
0.020
1
8mer
655-668
0.007
1
6mer
1910-1926
0.004
3
6mer
1605-1616
0.003
2
RP11-253E3.3
hsa-miR-128-3p
0.796
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000513358
Biotype: lincRNA
Gene id: ENSG00000250899
Gene Name: RP11-253E3.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
536-560
0.027
4
6mer
167-184
0.003
0
6mer
1366-1385
0.001
2
6mer
2609-2634
0.001
1
6mer
1648-1663
0.001
Not Conserved
LINC00608
hsa-miR-128-3p
0.796
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000598002
Biotype: lincRNA
Gene id: ENSG00000236445
Gene Name: LINC00608
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
52-71
0.022
1
6mer
66-76
0.005
1
6mer
249-268
0.004
0
6mer
23-36
0.002
1
RFPL1S
hsa-miR-128-3p
0.795
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000461286
Biotype: antisense
Gene id: ENSG00000225465
Gene Name: RFPL1S
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4709-4725
0.014
0
8mer
3046-3064
0.011
Not Conserved
8mer
1828-1852
0.007
Not Conserved
ALMS1-IT1
hsa-miR-128-3p
0.795
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000441587
Biotype: sense_intronic
Gene id: ENSG00000230002
Gene Name: ALMS1-IT1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
289-304
0.021
1
7mer
837-861
0.012
1
XLOC_004205
hsa-miR-128-3p
0.795
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008689
Biotype: transcript isomorph
Gene id: XLOC_004205
Gene Name: XLOC_004205
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
5104-5116
0.023
2
6mer
624-634
0.003
1
6mer
4576-4585
0.003
2
6mer
4672-4699
0.002
1
6mer
2395-2408
0.002
1
XLOC_003809
hsa-miR-128-3p
0.795
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008359
Biotype: transcript isomorph
Gene id: XLOC_003809
Gene Name: XLOC_003809
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3777-3793
0.027
0
6mer
298-315
0.004
1
6mer
1184-1200
0.003
1
RP11-230L22.4
hsa-miR-128-3p
0.795
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000458025
Biotype: antisense
Gene id: ENSG00000237336
Gene Name: RP11-230L22.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
279-303
0.033
6
LINC00969
hsa-miR-128-3p
0.795
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000608699
Biotype: lincRNA
Gene id: ENSG00000242086
Gene Name: LINC00969
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
78-98
0.027
Not Conserved
6mer
128-143
0.006
6
FGF13-AS1
hsa-miR-128-3p
0.794
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000446383
Biotype: antisense
Gene id: ENSG00000226031
Gene Name: FGF13-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
448-472
0.029
6
6mer
265-288
0.004
6
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