LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-128-3p


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Gene
miRNA
Score
DIANA Links
AP001429.1
hsa-miR-128-3p
0.802
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000602568
Biotype: sense_intronic
Gene id: ENSG00000270116
Gene Name: AP001429.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
404-417
0.022
3
6mer
230-251
0.007
2
6mer
501-521
0.005
1
LINC00649
hsa-miR-128-3p
0.802
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000613667
Biotype: antisense
Gene id: ENSG00000237945
Gene Name: LINC00649
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
801-813
0.034
1
RP11-106M3.3
hsa-miR-128-3p
0.802
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000570175
Biotype: antisense
Gene id: ENSG00000261460
Gene Name: RP11-106M3.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2600-2612
0.024
3
7mer
2957-2979
0.007
3
6mer
2869-2890
0.002
1
RP11-74D7.3
hsa-miR-128-3p
0.802
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000621925
Biotype: sense_intronic
Gene id: ENSG00000278472
Gene Name: RP11-74D7.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
71-82
0.025
6
6mer
127-135
0.009
6
RP11-696N14.1
hsa-miR-128-3p
0.802
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000509295
Biotype: antisense
Gene id: ENSG00000246090
Gene Name: RP11-696N14.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
228-250
0.017
0
7mer
872-887
0.014
1
6mer
327-346
0.002
1
PDXDC2P
hsa-miR-128-3p
0.802
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000561788
Biotype: retained_intron
Gene id: ENSG00000196696
Gene Name: PDXDC2P
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1461-1473
0.031
2
6mer
589-610
0.002
Not Conserved
6mer
516-530
0.001
1
RP11-421L21.3
hsa-miR-128-3p
0.801
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000446527
Biotype: antisense
Gene id: ENSG00000233184
Gene Name: RP11-421L21.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
602-627
0.030
2
6mer
830-856
0.004
1
RP11-7F17.3
hsa-miR-128-3p
0.801
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000555512
Biotype: lincRNA
Gene id: ENSG00000258819
Gene Name: RP11-7F17.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
270-283
0.033
1
RFPL3S
hsa-miR-128-3p
0.801
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: NR_002596.2
Biotype: sense
Gene id: NR_002596.2 (gene)
Gene Name: RFPL3S
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
342-358
0.033
1
AL450992.2
hsa-miR-128-3p
0.801
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000434182
Biotype: antisense
Gene id: ENSG00000234614
Gene Name: AL450992.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
102-127
0.033
2
XLOC_011384
hsa-miR-128-3p
0.801
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023557
Biotype: transcript isomorph
Gene id: XLOC_011384
Gene Name: XLOC_011384
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
908-926
0.029
1
7mer
2824-2845
0.004
2
RP4-665N4.8
hsa-miR-128-3p
0.800
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000479395
Biotype: antisense
Gene id: ENSG00000271554
Gene Name: RP4-665N4.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
295-320
0.030
3
6mer
188-206
0.004
3
RP11-463J10.4
hsa-miR-128-3p
0.799
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000555115
Biotype: antisense
Gene id: ENSG00000258854
Gene Name: RP11-463J10.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
192-206
0.033
3
RP11-169F17.1
hsa-miR-128-3p
0.799
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000581011
Biotype: lincRNA
Gene id: ENSG00000263711
Gene Name: RP11-169F17.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2557-2575
0.027
0
7mer
1641-1660
0.007
1
RP5-1185H19.2
hsa-miR-128-3p
0.798
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000426515
Biotype: lincRNA
Gene id: ENSG00000235933
Gene Name: RP5-1185H19.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
534-549
0.015
1
7mer
100-117
0.008
1
7mer
117-135
0.006
0
6mer
51-77
0.003
1
RP11-276H19.1
hsa-miR-128-3p
0.798
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000415801
Biotype: lincRNA
Gene id: ENSG00000226237
Gene Name: RP11-276H19.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3943-3963
0.020
1
7mer
3569-3590
0.010
0
6mer
332-347
0.003
1
RP11-634B7.5
hsa-miR-128-3p
0.798
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000426444
Biotype: lincRNA
Gene id: ENSG00000239395
Gene Name: RP11-634B7.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
254-280
0.030
1
6mer
266-280
0.003
0
PRKG1-AS1
hsa-miR-128-3p
0.798
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000452247
Biotype: antisense
Gene id: ENSG00000236671
Gene Name: PRKG1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
Fibroblasts Foreskin Normal/Primary
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
114-121
0.033
Not Conserved
RP11-513I15.6
hsa-miR-128-3p
0.798
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000429998
Biotype: retained_intron
Gene id: ENSG00000225339
Gene Name: RP11-513I15.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
5790-5810
0.011
3
8mer
4679-4685
0.010
1
7mer
6008-6018
0.005
2
7mer
1075-1099
0.003
2
6mer
5492-5509
0.001
1
6mer
2144-2166
0.001
0
6mer
5308-5329
0.001
1
RP11-63B13.1
hsa-miR-128-3p
0.798
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000567769
Biotype: lincRNA
Gene id: ENSG00000261501
Gene Name: RP11-63B13.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1266-1290
0.028
1
6mer
2051-2058
0.005
1
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