LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-128-3p


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Gene
miRNA
Score
DIANA Links
LINC00426
hsa-miR-128-3p
0.805
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000420219
Biotype: lincRNA
Gene id: ENSG00000238121
Gene Name: LINC00426
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
964-978
0.029
1
7mer
789-802
0.003
Not Conserved
6mer
690-708
0.002
0
RP11-166A12.1
hsa-miR-128-3p
0.805
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000514657
Biotype: lincRNA
Gene id: ENSG00000251538
Gene Name: RP11-166A12.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
239-254
0.034
1
CTA-243E7.1
hsa-miR-128-3p
0.804
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623980
Biotype: antisense
Gene id: ENSG00000279110
Gene Name: CTA-243E7.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1257-1269
0.007
2
7mer
551-567
0.006
1
7mer
1290-1315
0.004
1
6mer
389-411
0.003
1
7mer
12613-12632
0.003
Not Conserved
6mer
11897-11908
0.002
0
7mer
1794-1809
0.001
0
6mer
1536-1551
0.001
1
6mer
8932-8949
0.001
1
6mer
2217-2232
0.001
0
6mer
6872-6885
0.001
1
6mer
6569-6595
0.001
Not Conserved
6mer
7407-7415
0.001
Not Conserved
6mer
5597-5619
0.001
1
6mer
5459-5482
0.001
1
RASSF8-AS1
hsa-miR-128-3p
0.804
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000537801
Biotype: antisense
Gene id: ENSG00000246695
Gene Name: RASSF8-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
84-101
0.025
0
7mer
101-116
0.008
1
RP6-109B7.2
hsa-miR-128-3p
0.804
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000439423
Biotype: lincRNA
Gene id: ENSG00000231010
Gene Name: RP6-109B7.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
458-468
0.031
5
6mer
939-959
0.003
1
RP11-274H2.3
hsa-miR-128-3p
0.804
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000490375
Biotype: antisense
Gene id: ENSG00000240032
Gene Name: RP11-274H2.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
638-661
0.034
0
RP11-279O17.2
hsa-miR-128-3p
0.804
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000562361
Biotype: lincRNA
Gene id: ENSG00000260003
Gene Name: RP11-279O17.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
427-448
0.029
1
7mer
510-523
0.005
0
XLOC_012810
hsa-miR-128-3p
0.804
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026483
Biotype: transcript isomorph
Gene id: XLOC_012810
Gene Name: XLOC_012810
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
396-410
0.025
0
7mer
36-63
0.008
0
RP11-1069G10.1
hsa-miR-128-3p
0.804
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000558888
Biotype: antisense
Gene id: ENSG00000259370
Gene Name: RP11-1069G10.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
5297-5316
0.024
3
7mer
4936-4957
0.003
0
7mer
1617-1644
0.003
1
6mer
1221-1231
0.002
2
6mer
1199-1213
0.001
3
6mer
4816-4843
0.001
3
6mer
4501-4515
0.001
1
RP11-728G15.1
hsa-miR-128-3p
0.804
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000544339
Biotype: antisense
Gene id: ENSG00000256008
Gene Name: RP11-728G15.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
262-279
0.034
3
XLOC_012318
hsa-miR-128-3p
0.804
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025508
Biotype: transcript isomorph
Gene id: XLOC_012318
Gene Name: XLOC_012318
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
350-364
0.034
0
MIAT
hsa-miR-128-3p
0.804
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000620145
Biotype: lincRNA
Gene id: ENSG00000225783
Gene Name: MIAT
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
721-737
0.028
2
6mer
6142-6156
0.002
1
6mer
3494-3512
0.001
1
6mer
4370-4390
0.001
1
6mer
5130-5145
0.001
Not Conserved
ZNF341-AS1
hsa-miR-128-3p
0.803
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000439444
Biotype: antisense
Gene id: ENSG00000230753
Gene Name: ZNF341-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
307-313
0.032
1
6mer
67-92
0.002
1
RP11-645C24.5
hsa-miR-128-3p
0.803
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000567370
Biotype: lincRNA
Gene id: ENSG00000260306
Gene Name: RP11-645C24.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1593-1616
0.030
2
6mer
986-1011
0.004
2
RP11-690D19.3
hsa-miR-128-3p
0.803
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000561652
Biotype: sense_overlapping
Gene id: ENSG00000260966
Gene Name: RP11-690D19.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
137-155
0.026
6
6mer
114-128
0.004
2
6mer
1039-1062
0.002
3
6mer
1788-1804
0.002
2
LINC00548
hsa-miR-128-3p
0.803
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000617777
Biotype: lincRNA
Gene id: ENSG00000278772
Gene Name: LINC00548
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Liver Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1417-1436
0.019
0
7mer
808-813
0.009
2
6mer
60-74
0.003
1
6mer
1780-1799
0.002
3
6mer
1340-1354
0.001
1
RP11-2N5.2
hsa-miR-128-3p
0.803
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000513366
Biotype: lincRNA
Gene id: ENSG00000249551
Gene Name: RP11-2N5.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
114-132
0.034
0
RP11-5C23.1
hsa-miR-128-3p
0.803
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000608064
Biotype: antisense
Gene id: ENSG00000272760
Gene Name: RP11-5C23.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
120-132
0.028
Not Conserved
6mer
214-229
0.005
0
XLOC_004850
hsa-miR-128-3p
0.803
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010941
Biotype: transcript isomorph
Gene id: XLOC_004850
Gene Name: XLOC_004850
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Heart Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
500-521
0.020
1
7mer
1996-2010
0.011
1
6mer
1032-1044
0.002
0
LINC00608
hsa-miR-128-3p
0.802
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: NR_015390.1
Biotype: lincRNA
Gene id: NR_015390.1 (gene)
Gene Name: LINC00608
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1023-1028
0.022
4
7mer
972-990
0.007
Not Conserved
6mer
198-217
0.004
0
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