LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-128-3p


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Gene
miRNA
Score
DIANA Links
RP11-488I20.9
hsa-miR-128-3p
0.810
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000562945
Biotype: lincRNA
Gene id: ENSG00000260073
Gene Name: RP11-488I20.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
576-598
0.034
0
PTCSC3
hsa-miR-128-3p
0.810
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000556013
Biotype: lincRNA
Gene id: ENSG00000259104
Gene Name: PTCSC3
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
218-235
0.026
1
6mer
507-515
0.006
3
6mer
149-175
0.003
1
TTN-AS1
hsa-miR-128-3p
0.809
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000610290
Biotype: antisense
Gene id: ENSG00000237298
Gene Name: TTN-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
105-126
0.034
8
ZNF571-AS1
hsa-miR-128-3p
0.809
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000591177
Biotype: antisense
Gene id: ENSG00000267470
Gene Name: ZNF571-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HREpiC Kidney Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
256-282
0.034
0
RP11-449D8.5
hsa-miR-128-3p
0.809
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000583794
Biotype: lincRNA
Gene id: ENSG00000266573
Gene Name: RP11-449D8.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
61-86
0.019
1
7mer
61-78
0.015
0
MIAT
hsa-miR-128-3p
0.808
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000616213
Biotype: lincRNA
Gene id: ENSG00000225783
Gene Name: MIAT
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
721-737
0.028
2
6mer
4244-4264
0.002
1
6mer
6016-6030
0.002
1
6mer
3368-3386
0.001
1
6mer
5004-5019
0.001
Not Conserved
XLOC_013853
hsa-miR-128-3p
0.808
mTTBlnEmP

Gene Details
Chromosome: chr21
Transcript: TCONS_00028962
Biotype: transcript isomorph
Gene id: XLOC_013853
Gene Name: XLOC_013853
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
- Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
117-142
0.028
0
6mer
262-284
0.007
0
LAMTOR5-AS1
hsa-miR-128-3p
0.808
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000609709
Biotype: antisense
Gene id: ENSG00000224699
Gene Name: LAMTOR5-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
310-324
0.034
0
LINC01267
hsa-miR-128-3p
0.808
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000502417
Biotype: lincRNA
Gene id: ENSG00000251576
Gene Name: LINC01267
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
36-59
0.026
1
7mer
418-433
0.006
0
6mer
501-516
0.002
0
RP11-362A1.1
hsa-miR-128-3p
0.808
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000550506
Biotype: lincRNA
Gene id: ENSG00000257747
Gene Name: RP11-362A1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
850-862
0.031
1
6mer
1038-1052
0.003
0
XLOC_002133
hsa-miR-128-3p
0.807
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004287
Biotype: transcript isomorph
Gene id: XLOC_002133
Gene Name: XLOC_002133
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2301-2326
0.031
0
6mer
1935-1961
0.003
1
CTD-2303H24.2
hsa-miR-128-3p
0.807
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000420856
Biotype: retained_intron
Gene id: ENSG00000273018
Gene Name: CTD-2303H24.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1003-1021
0.032
Not Conserved
6mer
779-789
0.002
Not Conserved
RP11-214L13.1
hsa-miR-128-3p
0.807
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000563553
Biotype: lincRNA
Gene id: ENSG00000260930
Gene Name: RP11-214L13.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2180-2192
0.034
2
RFPL3S
hsa-miR-128-3p
0.807
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: NR_104232.1
Biotype: sense
Gene id: NR_104232.1 (gene)
Gene Name: RFPL3S
UCSC graphic: -
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
342-358
0.034
1
RP11-66B24.4
hsa-miR-128-3p
0.806
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000560068
Biotype: antisense
Gene id: ENSG00000259583
Gene Name: RP11-66B24.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2126-2145
0.021
0
7mer
2069-2079
0.004
0
6mer
455-475
0.004
2
6mer
1494-1519
0.002
7
6mer
635-662
0.002
0
6mer
1139-1166
0.001
Not Conserved
XLOC_003680
hsa-miR-128-3p
0.806
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008218
Biotype: transcript isomorph
Gene id: XLOC_003680
Gene Name: XLOC_003680
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
- Placenta Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
371-389
0.026
1
6mer
1466-1481
0.008
2
RP11-283I3.1
hsa-miR-128-3p
0.806
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000544067
Biotype: antisense
Gene id: ENSG00000255671
Gene Name: RP11-283I3.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
290-312
0.034
0
RP11-742D12.2
hsa-miR-128-3p
0.806
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000624895
Biotype: TEC
Gene id: ENSG00000270112
Gene Name: RP11-742D12.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2640-2662
0.019
3
6mer
4147-4163
0.003
0
6mer
86-110
0.003
1
6mer
667-674
0.002
1
6mer
522-538
0.002
1
6mer
1608-1626
0.002
4
6mer
3555-3578
0.002
1
6mer
1855-1871
0.001
1
RP11-46C24.7
hsa-miR-128-3p
0.805
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000570267
Biotype: antisense
Gene id: ENSG00000259877
Gene Name: RP11-46C24.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
120-144
0.030
0
6mer
1736-1756
0.004
0
RP11-105C19.2
hsa-miR-128-3p
0.805
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000567401
Biotype: lincRNA
Gene id: ENSG00000260973
Gene Name: RP11-105C19.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1594-1617
0.029
3
6mer
987-1012
0.005
4
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