LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-128-3p


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Gene
miRNA
Score
DIANA Links
XLOC_000308
hsa-miR-128-3p
0.815
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001047
Biotype: transcript isomorph
Gene id: XLOC_000308
Gene Name: XLOC_000308
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
705-732
0.035
6
DLX6-AS1
hsa-miR-128-3p
0.815
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000430027
Biotype: antisense
Gene id: ENSG00000231764
Gene Name: DLX6-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
11435-11456
0.007
1
6mer
159-167
0.005
1
6mer
929-952
0.004
7
6mer
638-649
0.004
5
6mer
110-120
0.004
1
7mer
6112-6129
0.002
1
6mer
1735-1752
0.002
2
6mer
9301-9327
0.002
2
6mer
12521-12536
0.002
2
6mer
11741-11761
0.001
1
6mer
7351-7376
0.001
4
6mer
1575-1590
0.001
2
6mer
1523-1534
0.001
0
XLOC_004540
hsa-miR-128-3p
0.815
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010083
Biotype: transcript isomorph
Gene id: XLOC_004540
Gene Name: XLOC_004540
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Lung Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
190-207
0.035
1
CTA-280A3.2
hsa-miR-128-3p
0.814
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623760
Biotype: lincRNA
Gene id: ENSG00000279712
Gene Name: CTA-280A3.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
5750-5762
0.007
1
8mer
8430-8442
0.005
1
6mer
9265-9279
0.005
1
8mer
6895-6918
0.004
0
7mer
4400-4426
0.004
1
6mer
5979-5995
0.002
1
6mer
8272-8281
0.001
1
6mer
3204-3219
0.001
0
6mer
3883-3897
0.001
0
6mer
4660-4679
0.001
0
6mer
3585-3595
0.001
0
6mer
5510-5534
0.001
0
6mer
7597-7616
0.001
1
KDM4A-AS1
hsa-miR-128-3p
0.814
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000434346
Biotype: antisense
Gene id: ENSG00000236200
Gene Name: KDM4A-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
26-39
0.032
2
6mer
114-122
0.003
1
LINC01140
hsa-miR-128-3p
0.814
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000484933
Biotype: lincRNA
Gene id: ENSG00000267272
Gene Name: LINC01140
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2423-2449
0.017
0
7mer
864-876
0.007
3
6mer
2957-2977
0.007
7
6mer
1949-1958
0.003
6
6mer
894-907
0.001
1
RP11-372K14.2
hsa-miR-128-3p
0.814
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000603472
Biotype: antisense
Gene id: ENSG00000270681
Gene Name: RP11-372K14.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
204-230
0.018
2
8mer
832-853
0.013
0
6mer
695-709
0.004
0
LINC00476
hsa-miR-128-3p
0.814
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000433656
Biotype: processed_transcript
Gene id: ENSG00000175611
Gene Name: LINC00476
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
325-348
0.025
1
7mer
430-440
0.010
1
XLOC_012740
hsa-miR-128-3p
0.814
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026391
Biotype: transcript isomorph
Gene id: XLOC_012740
Gene Name: XLOC_012740
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
147-167
0.018
0
7mer
1379-1405
0.012
0
6mer
829-845
0.005
2
TMX2-CTNND1
hsa-miR-128-3p
0.813
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: NR_037646.1
Biotype: sense
Gene id: NR_037646.1 (gene)
Gene Name: TMX2-CTNND1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1890-1910
0.013
11
7mer
978-1003
0.010
5
6mer
583-607
0.005
9
6mer
498-509
0.004
5
6mer
2287-2296
0.002
6
6mer
4114-4130
0.002
3
CTD-3105H18.13
hsa-miR-128-3p
0.813
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000563695
Biotype: lincRNA
Gene id: ENSG00000261280
Gene Name: CTD-3105H18.13
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
183-203
0.031
1
6mer
947-962
0.003
0
TTN-AS1
hsa-miR-128-3p
0.813
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000589234
Biotype: antisense
Gene id: ENSG00000237298
Gene Name: TTN-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
94-115
0.035
8
RP11-76I14.1
hsa-miR-128-3p
0.813
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000545549
Biotype: lincRNA
Gene id: ENSG00000256637
Gene Name: RP11-76I14.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
29-56
0.035
3
RFPL3S
hsa-miR-128-3p
0.812
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: NR_001450.3
Biotype: sense
Gene id: NR_001450.3 (gene)
Gene Name: RFPL3S
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
342-358
0.035
1
RP11-815J21.2
hsa-miR-128-3p
0.812
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000561409
Biotype: antisense
Gene id: ENSG00000259375
Gene Name: RP11-815J21.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
854-865
0.035
4
CTD-2516F10.2
hsa-miR-128-3p
0.812
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000533693
Biotype: antisense
Gene id: ENSG00000251364
Gene Name: CTD-2516F10.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
290-304
0.027
1
6mer
341-357
0.005
1
6mer
379-405
0.003
1
LINC01125
hsa-miR-128-3p
0.811
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000599959
Biotype: antisense
Gene id: ENSG00000228486
Gene Name: LINC01125
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
479-499
0.035
0
RP11-11N5.1
hsa-miR-128-3p
0.810
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000507644
Biotype: lincRNA
Gene id: ENSG00000250829
Gene Name: RP11-11N5.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
439-452
0.012
0
9mer
294-315
0.010
Not Conserved
7mer
463-478
0.010
1
6mer
324-346
0.003
Not Conserved
OSBPL10-AS1
hsa-miR-128-3p
0.810
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000458127
Biotype: antisense
Gene id: ENSG00000232490
Gene Name: OSBPL10-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
168-185
0.034
0
ZNF341-AS1
hsa-miR-128-3p
0.810
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000443171
Biotype: antisense
Gene id: ENSG00000230753
Gene Name: ZNF341-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
499-505
0.033
1
6mer
139-164
0.002
1
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