LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-128-3p


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Gene
miRNA
Score
DIANA Links
PARD6G-AS1
hsa-miR-128-3p
0.819
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000588226
Biotype: antisense
Gene id: ENSG00000267270
Gene Name: PARD6G-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
28-39
0.031
1
6mer
307-328
0.005
0
RP11-586K12.10
hsa-miR-128-3p
0.818
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000570084
Biotype: lincRNA
Gene id: ENSG00000260311
Gene Name: RP11-586K12.10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
114-126
0.035
0
RP11-211N8.2
hsa-miR-128-3p
0.818
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000450704
Biotype: lincRNA
Gene id: ENSG00000226007
Gene Name: RP11-211N8.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
303-323
0.022
1
6mer
1401-1426
0.013
1
HSD52
hsa-miR-128-3p
0.818
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_027120.1
Biotype: lincRNA
Gene id: NR_027120.1 (gene)
Gene Name: HSD52
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
39-53
0.030
1
7mer
940-951
0.005
2
AC012593.1
hsa-miR-128-3p
0.818
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000588650
Biotype: lincRNA
Gene id: ENSG00000226994
Gene Name: AC012593.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
475-485
0.024
2
7mer
351-374
0.011
2
RP11-2H8.2
hsa-miR-128-3p
0.818
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000552780
Biotype: lincRNA
Gene id: ENSG00000257410
Gene Name: RP11-2H8.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
85-108
0.025
Not Conserved
6mer
389-400
0.006
2
6mer
228-244
0.004
0
RP11-211N8.2
hsa-miR-128-3p
0.818
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000446626
Biotype: lincRNA
Gene id: ENSG00000226007
Gene Name: RP11-211N8.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
276-296
0.022
1
6mer
2099-2124
0.013
1
RP11-120K24.4
hsa-miR-128-3p
0.818
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000601559
Biotype: sense_intronic
Gene id: ENSG00000269356
Gene Name: RP11-120K24.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
565-579
0.035
0
RP11-1437A8.4
hsa-miR-128-3p
0.818
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000565847
Biotype: lincRNA
Gene id: ENSG00000260827
Gene Name: RP11-1437A8.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
301-313
0.035
0
RP11-680C21.1
hsa-miR-128-3p
0.818
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000577346
Biotype: lincRNA
Gene id: ENSG00000264727
Gene Name: RP11-680C21.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2500-2526
0.027
0
6mer
292-303
0.005
1
7mer
2422-2437
0.003
Not Conserved
XLOC_010799
hsa-miR-128-3p
0.817
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022470
Biotype: transcript isomorph
Gene id: XLOC_010799
Gene Name: XLOC_010799
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
73-93
0.028
5
6mer
952-971
0.004
3
6mer
411-437
0.003
4
CTA-292E10.9
hsa-miR-128-3p
0.817
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623127
Biotype: antisense
Gene id: ENSG00000280111
Gene Name: CTA-292E10.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
18470-18489
0.019
Not Conserved
8mer
16947-16965
0.004
0
7mer
1524-1539
0.003
Not Conserved
6mer
5186-5204
0.002
0
7mer
1105-1120
0.002
Not Conserved
6mer
12206-12218
0.002
0
6mer
9946-9961
0.001
1
7mer
22035-22058
0.001
0
7mer
6359-6374
0.001
0
6mer
8329-8341
0.001
Not Conserved
RP11-555G19.1
hsa-miR-128-3p
0.817
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000528497
Biotype: lincRNA
Gene id: ENSG00000255327
Gene Name: RP11-555G19.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
433-453
0.035
0
CTB-178M22.1
hsa-miR-128-3p
0.817
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000517408
Biotype: antisense
Gene id: ENSG00000253925
Gene Name: CTB-178M22.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1428-1440
0.035
4
GABPB1-AS1
hsa-miR-128-3p
0.817
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000499624
Biotype: antisense
Gene id: ENSG00000244879
Gene Name: GABPB1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
7797-7805
0.013
Not Conserved
6mer
553-577
0.005
1
7mer
4153-4164
0.004
1
7mer
13142-13152
0.003
0
6mer
14137-14156
0.002
1
6mer
915-934
0.002
0
6mer
10325-10344
0.002
1
6mer
7194-7203
0.002
3
6mer
4732-4740
0.002
0
6mer
14230-14256
0.001
Not Conserved
AP001258.4
hsa-miR-128-3p
0.816
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000501817
Biotype: lincRNA
Gene id: ENSG00000245571
Gene Name: AP001258.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1353-1368
0.016
0
8mer
1953-1971
0.012
0
7mer
589-601
0.007
0
RP11-122K13.12
hsa-miR-128-3p
0.816
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000424450
Biotype: antisense
Gene id: ENSG00000235245
Gene Name: RP11-122K13.12
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
538-556
0.035
0
RP11-111F5.4
hsa-miR-128-3p
0.816
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000377518
Biotype: retained_intron
Gene id: ENSG00000204802
Gene Name: RP11-111F5.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2285-2305
0.025
0
6mer
458-467
0.010
0
LINC01094
hsa-miR-128-3p
0.816
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000503259
Biotype: lincRNA
Gene id: ENSG00000251442
Gene Name: LINC01094
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
64-86
0.018
0
7mer
774-799
0.017
2
C21orf49
hsa-miR-128-3p
0.815
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000612326
Biotype: lincRNA
Gene id: ENSG00000205930
Gene Name: C21orf49
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
274-299
0.035
1
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