LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-128-3p


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Gene
miRNA
Score
DIANA Links
RP11-94M14.3
hsa-miR-128-3p
0.825
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000425365
Biotype: lincRNA
Gene id: ENSG00000238291
Gene Name: RP11-94M14.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
205-229
0.033
1
6mer
466-484
0.003
1
RP4-569D19.8
hsa-miR-128-3p
0.825
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000610000
Biotype: lincRNA
Gene id: ENSG00000273044
Gene Name: RP4-569D19.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
325-340
0.019
1
7mer
383-408
0.010
0
7mer
376-393
0.007
0
LINC01224
hsa-miR-128-3p
0.824
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000600643
Biotype: lincRNA
Gene id: ENSG00000269416
Gene Name: LINC01224
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1242-1253
0.025
0
6mer
2275-2299
0.011
1
XLOC_002377
hsa-miR-128-3p
0.824
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004484
Biotype: transcript isomorph
Gene id: XLOC_002377
Gene Name: XLOC_002377
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Breast Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
492-509
0.036
2
RP11-445N18.7
hsa-miR-128-3p
0.824
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000427229
Biotype: processed_transcript
Gene id: ENSG00000243349
Gene Name: RP11-445N18.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
399-415
0.031
6
6mer
3520-3536
0.005
1
XLOC_001857
hsa-miR-128-3p
0.824
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004020
Biotype: transcript isomorph
Gene id: XLOC_001857
Gene Name: XLOC_001857
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Colon Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
309-326
0.036
1
RP11-462L8.1
hsa-miR-128-3p
0.823
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000414157
Biotype: lincRNA
Gene id: ENSG00000229656
Gene Name: RP11-462L8.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
937-961
0.033
4
6mer
548-573
0.003
2
RP1-283E3.8
hsa-miR-128-3p
0.823
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000598846
Biotype: processed_transcript
Gene id: ENSG00000268575
Gene Name: RP1-283E3.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
4677-4685
0.027
0
8mer+wobble
3704-3722
0.004
Not Conserved
6mer
4602-4613
0.002
0
8mer+wobble
3113-3131
0.002
0
GS1-174L6.4
hsa-miR-128-3p
0.823
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000428391
Biotype: antisense
Gene id: ENSG00000224691
Gene Name: GS1-174L6.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
170-188
0.036
0
HPVC1
hsa-miR-128-3p
0.822
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_004422.2
Biotype: lincRNA
Gene id: NR_004422.2 (gene)
Gene Name: HPVC1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
273-286
0.023
1
6mer
309-319
0.005
0
6mer
737-743
0.004
1
6mer
938-957
0.004
0
XLOC_009645
hsa-miR-128-3p
0.822
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020306
Biotype: transcript isomorph
Gene id: XLOC_009645
Gene Name: XLOC_009645
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1685-1704
0.034
0
7mer
606-619
0.002
Not Conserved
XLOC_011179
hsa-miR-128-3p
0.822
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023310
Biotype: transcript isomorph
Gene id: XLOC_011179
Gene Name: XLOC_011179
UCSC graphic: -
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1226-1250
0.020
1
7mer
302-317
0.008
0
6mer
1017-1026
0.008
0
RP11-462L8.1
hsa-miR-128-3p
0.821
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000450890
Biotype: lincRNA
Gene id: ENSG00000229656
Gene Name: RP11-462L8.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
944-968
0.033
4
6mer
555-580
0.003
2
RP11-120J1.1
hsa-miR-128-3p
0.821
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000440947
Biotype: antisense
Gene id: ENSG00000225472
Gene Name: RP11-120J1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
222-246
0.027
0
7mer
249-263
0.006
0
6mer
321-335
0.002
0
TTN-AS1
hsa-miR-128-3p
0.821
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000590743
Biotype: antisense
Gene id: ENSG00000237298
Gene Name: TTN-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
765-786
0.036
8
LINC01013
hsa-miR-128-3p
0.820
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000422700
Biotype: lincRNA
Gene id: ENSG00000228495
Gene Name: LINC01013
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
745-766
0.015
1
7mer
721-733
0.006
0
6mer
31-56
0.006
3
6mer
128-151
0.005
2
6mer
188-204
0.004
1
CTD-2561J22.5
hsa-miR-128-3p
0.820
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000600469
Biotype: lincRNA
Gene id: ENSG00000268119
Gene Name: CTD-2561J22.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
198-210
0.035
0
XLOC_011591
hsa-miR-128-3p
0.819
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023798
Biotype: transcript isomorph
Gene id: XLOC_011591
Gene Name: XLOC_011591
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
339-356
0.020
1
7mer
411-424
0.016
1
RP11-1152H15.1
hsa-miR-128-3p
0.819
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000554519
Biotype: lincRNA
Gene id: ENSG00000258807
Gene Name: RP11-1152H15.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
568-591
0.035
1
AC012593.1
hsa-miR-128-3p
0.819
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000586769
Biotype: lincRNA
Gene id: ENSG00000226994
Gene Name: AC012593.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
557-567
0.024
2
7mer
433-456
0.011
2
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