LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-128-3p


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Gene
miRNA
Score
DIANA Links
RP11-367J11.2
hsa-miR-128-3p
0.837
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000500031
Biotype: antisense
Gene id: ENSG00000245748
Gene Name: RP11-367J11.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
456-469
0.023
1
8mer+wobble
4108-4127
0.006
0
6mer
1042-1056
0.003
3
6mer
451-461
0.002
0
7mer
2256-2283
0.002
0
6mer
3288-3306
0.002
1
6mer
2298-2321
0.001
0
XLOC_010419
hsa-miR-128-3p
0.837
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021820
Biotype: transcript isomorph
Gene id: XLOC_010419
Gene Name: XLOC_010419
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Heart Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2596-2601
0.016
1
7mer
2918-2933
0.015
1
7mer
1406-1420
0.003
1
6mer
1109-1129
0.002
2
6mer
1276-1291
0.002
2
RP11-48F14.2
hsa-miR-128-3p
0.836
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000456535
Biotype: lincRNA
Gene id: ENSG00000226859
Gene Name: RP11-48F14.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
80-106
0.037
1
C3orf65
hsa-miR-128-3p
0.836
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000296270
Biotype: antisense
Gene id: ENSG00000163915
Gene Name: C3orf65
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1386-1400
0.018
2
7mer
1697-1712
0.010
1
6mer
1280-1298
0.004
5
6mer
689-705
0.003
2
6mer
1199-1220
0.002
1
LINC00969
hsa-miR-128-3p
0.836
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000445430
Biotype: lincRNA
Gene id: ENSG00000242086
Gene Name: LINC00969
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3872-3894
0.022
Not Conserved
7mer
713-738
0.009
3
6mer
3924-3939
0.004
6
6mer
2750-2761
0.002
0
RP11-435D7.3
hsa-miR-128-3p
0.835
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000373226
Biotype: antisense
Gene id: ENSG00000232335
Gene Name: RP11-435D7.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
184-197
0.037
7
LINC00410
hsa-miR-128-3p
0.835
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000419272
Biotype: lincRNA
Gene id: ENSG00000231674
Gene Name: LINC00410
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1723-1739
0.019
0
7mer
211-225
0.013
2
7mer
357-372
0.006
Not Conserved
RP11-64D22.5
hsa-miR-128-3p
0.835
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000485020
Biotype: lincRNA
Gene id: ENSG00000250271
Gene Name: RP11-64D22.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
151-169
0.037
6
AC005703.3
hsa-miR-128-3p
0.835
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000431343
Biotype: lincRNA
Gene id: ENSG00000230971
Gene Name: AC005703.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1503-1515
0.020
1
7mer
1533-1555
0.011
1
6mer
430-447
0.003
1
6mer
1631-1656
0.003
1
RP11-439H8.4
hsa-miR-128-3p
0.835
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000415549
Biotype: antisense
Gene id: ENSG00000237324
Gene Name: RP11-439H8.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
123-148
0.037
3
XLOC_012451
hsa-miR-128-3p
0.834
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025223
Biotype: transcript isomorph
Gene id: XLOC_012451
Gene Name: XLOC_012451
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
180-193
0.033
0
6mer
531-547
0.004
0
CTD-2139B15.2
hsa-miR-128-3p
0.834
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000511821
Biotype: lincRNA
Gene id: ENSG00000248223
Gene Name: CTD-2139B15.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
674-683
0.037
1
LPP-AS2
hsa-miR-128-3p
0.834
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000605573
Biotype: antisense
Gene id: ENSG00000270959
Gene Name: LPP-AS2
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
92-114
0.032
2
6mer
158-168
0.004
1
6mer
1606-1625
0.001
Not Conserved
RP11-219B17.1
hsa-miR-128-3p
0.834
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000558235
Biotype: antisense
Gene id: ENSG00000245534
Gene Name: RP11-219B17.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
318-331
0.037
0
RP11-16L14.2
hsa-miR-128-3p
0.834
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000565366
Biotype: antisense
Gene id: ENSG00000261191
Gene Name: RP11-16L14.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
169-195
0.023
1
7mer
119-146
0.014
1
XLOC_001401
hsa-miR-128-3p
0.833
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003609
Biotype: transcript isomorph
Gene id: XLOC_001401
Gene Name: XLOC_001401
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
515-531
0.028
0
6mer
1494-1505
0.007
0
6mer
2017-2034
0.002
Not Conserved
XLOC_005077
hsa-miR-128-3p
0.833
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010550
Biotype: transcript isomorph
Gene id: XLOC_005077
Gene Name: XLOC_005077
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Prostate Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
5136-5158
0.019
2
8mer
2234-2251
0.013
1
7mer
1054-1075
0.004
0
RP11-883A18.3
hsa-miR-128-3p
0.833
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000579385
Biotype: lincRNA
Gene id: ENSG00000265728
Gene Name: RP11-883A18.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
259-273
0.031
0
6mer
455-466
0.006
0
RP11-15A1.3
hsa-miR-128-3p
0.832
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000591815
Biotype: lincRNA
Gene id: ENSG00000267058
Gene Name: RP11-15A1.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
464-481
0.031
0
6mer
153-166
0.006
1
MIMT1
hsa-miR-128-3p
0.832
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000597105
Biotype: lincRNA
Gene id: ENSG00000268654
Gene Name: MIMT1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
478-492
0.019
3
7mer
993-998
0.018
2
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