LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-128-3p


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Gene
miRNA
Score
DIANA Links
TP73-AS1
hsa-miR-128-3p
0.850
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000624948
Biotype: antisense
Gene id: ENSG00000227372
Gene Name: TP73-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
57-70
0.031
1
7mer
435-458
0.008
0
AP001258.4
hsa-miR-128-3p
0.850
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: NR_110184.1
Biotype: antisense
Gene id: NR_110184.1 (gene)
Gene Name: AP001258.4
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1437-1452
0.016
0
8mer
2037-2055
0.012
0
7mer
673-685
0.006
0
7mer
2220-2245
0.005
0
PCBP1-AS1
hsa-miR-128-3p
0.850
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000594376
Biotype: antisense
Gene id: ENSG00000179818
Gene Name: PCBP1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
131-149
0.035
0
6mer
1050-1065
0.004
1
XLOC_013467
hsa-miR-128-3p
0.850
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028113
Biotype: transcript isomorph
Gene id: XLOC_013467
Gene Name: XLOC_013467
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2286-2310
0.019
2
7mer
257-270
0.010
0
7mer
1029-1048
0.003
0
6mer
2705-2724
0.003
1
7mer
1541-1558
0.002
0
6mer
2119-2143
0.002
1
RP11-252C15.1
hsa-miR-128-3p
0.849
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000534827
Biotype: lincRNA
Gene id: ENSG00000254813
Gene Name: RP11-252C15.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1045-1067
0.019
Not Conserved
7mer
1034-1045
0.017
1
6mer
384-397
0.003
1
RP3-466P17.2
hsa-miR-128-3p
0.849
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000603042
Biotype: lincRNA
Gene id: ENSG00000270828
Gene Name: RP3-466P17.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2-22
0.039
4
RP11-108P20.3
hsa-miR-128-3p
0.849
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000587011
Biotype: lincRNA
Gene id: ENSG00000267705
Gene Name: RP11-108P20.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
437-452
0.039
1
LOC102467080
hsa-miR-128-3p
0.849
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: NR_104658.1
Biotype: lincRNA
Gene id: NR_104658.1 (gene)
Gene Name: LOC102467080
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
52-78
0.023
Not Conserved
7mer
23-36
0.016
1
LOC283070
hsa-miR-128-3p
0.849
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: NR_027322.1
Biotype: sense
Gene id: NR_027322.1 (gene)
Gene Name: LOC283070
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1129-1148
0.020
5
7mer
2197-2213
0.017
1
6mer
1347-1373
0.002
1
RP11-865I6.2
hsa-miR-128-3p
0.848
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000522354
Biotype: lincRNA
Gene id: ENSG00000254337
Gene Name: RP11-865I6.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
178-196
0.036
0
7mer
90-105
0.003
Not Conserved
RP11-286H14.8
hsa-miR-128-3p
0.848
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000466717
Biotype: antisense
Gene id: ENSG00000243230
Gene Name: RP11-286H14.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
209-229
0.039
0
RP11-18D7.2
hsa-miR-128-3p
0.847
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000513255
Biotype: antisense
Gene id: ENSG00000248694
Gene Name: RP11-18D7.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
69-90
0.039
4
RP11-744K17.1
hsa-miR-128-3p
0.847
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000562182
Biotype: lincRNA
Gene id: ENSG00000261020
Gene Name: RP11-744K17.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
49-61
0.032
1
6mer
974-991
0.005
1
6mer
3449-3465
0.002
0
XLOC_004260
hsa-miR-128-3p
0.846
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00009848
Biotype: transcript isomorph
Gene id: XLOC_004260
Gene Name: XLOC_004260
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1143-1167
0.014
1
7mer
437-453
0.012
1
6mer
128-143
0.005
1
6mer
1416-1420
0.005
1
6mer
1085-1097
0.002
1
FAM157A
hsa-miR-128-3p
0.846
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000437428
Biotype: lincRNA
Gene id: ENSG00000236438
Gene Name: FAM157A
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
692-718
0.039
0
RP11-545H22.1
hsa-miR-128-3p
0.846
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000512628
Biotype: lincRNA
Gene id: ENSG00000251264
Gene Name: RP11-545H22.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
86-98
0.039
5
XLOC_006488
hsa-miR-128-3p
0.845
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013857
Biotype: transcript isomorph
Gene id: XLOC_006488
Gene Name: XLOC_006488
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
76-82
0.023
1
6mer
296-320
0.008
2
6mer
173-192
0.008
1
RP4-781K5.6
hsa-miR-128-3p
0.845
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000442382
Biotype: lincRNA
Gene id: ENSG00000230628
Gene Name: RP4-781K5.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Liver Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
244-258
0.028
2
6mer
3098-3115
0.004
0
6mer
623-645
0.003
1
6mer
2239-2257
0.002
1
6mer
2896-2918
0.002
1
RP11-728G15.1
hsa-miR-128-3p
0.844
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000540369
Biotype: antisense
Gene id: ENSG00000256008
Gene Name: RP11-728G15.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
756-773
0.033
3
6mer
2-14
0.005
0
XLOC_006973
hsa-miR-128-3p
0.844
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014902
Biotype: transcript isomorph
Gene id: XLOC_006973
Gene Name: XLOC_006973
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
372-386
0.035
0
6mer
1158-1172
0.003
0
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