LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-128-3p


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Gene
miRNA
Score
DIANA Links
RP11-221N13.3
hsa-miR-128-3p
0.860
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000541391
Biotype: lincRNA
Gene id: ENSG00000256268
Gene Name: RP11-221N13.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
231-237
0.022
4
7mer
561-576
0.018
1
XXbac-B135H6.15
hsa-miR-128-3p
0.860
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000444039
Biotype: lincRNA
Gene id: ENSG00000237476
Gene Name: XXbac-B135H6.15
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
583-610
0.040
1
XLOC_011202
hsa-miR-128-3p
0.859
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023259
Biotype: transcript isomorph
Gene id: XLOC_011202
Gene Name: XLOC_011202
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1856-1877
0.037
0
6mer
133-153
0.003
1
KIRREL3-AS2
hsa-miR-128-3p
0.859
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000532988
Biotype: antisense
Gene id: ENSG00000254960
Gene Name: KIRREL3-AS2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
284-296
0.040
3
XLOC_006293
hsa-miR-128-3p
0.858
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00012895
Biotype: transcript isomorph
Gene id: XLOC_006293
Gene Name: XLOC_006293
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Breast Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2501-2524
0.019
1
7mer
295-318
0.009
1
7mer
1994-2014
0.007
1
6mer
24-43
0.005
1
XLOC_012877
hsa-miR-128-3p
0.858
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026185
Biotype: transcript isomorph
Gene id: XLOC_012877
Gene Name: XLOC_012877
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
- Kidney Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
5233-5251
0.030
0
7mer
2098-2117
0.004
1
6mer
453-463
0.004
2
6mer
3621-3640
0.002
1
RP11-332J15.4
hsa-miR-128-3p
0.857
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000606566
Biotype: lincRNA
Gene id: ENSG00000272071
Gene Name: RP11-332J15.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
430-453
0.029
1
7mer
111-126
0.011
0
DPP10-AS1
hsa-miR-128-3p
0.857
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000432658
Biotype: antisense
Gene id: ENSG00000235026
Gene Name: DPP10-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
35-46
0.040
1
RP11-28G8.1
hsa-miR-128-3p
0.857
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000570335
Biotype: antisense
Gene id: ENSG00000262833
Gene Name: RP11-28G8.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
539-558
0.038
3
6mer
1804-1825
0.001
0
6mer
1596-1620
0.001
0
AC006041.1
hsa-miR-128-3p
0.857
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000425322
Biotype: lincRNA
Gene id: ENSG00000229379
Gene Name: AC006041.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
150-174
0.040
3
RP5-1157M23.2
hsa-miR-128-3p
0.857
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000483834
Biotype: antisense
Gene id: ENSG00000243224
Gene Name: RP5-1157M23.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
Fibroblasts Foreskin Normal/Primary
Fibroblasts Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
243-255
0.027
3
7mer
866-880
0.013
2
KIRREL3-AS2
hsa-miR-128-3p
0.857
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000578084
Biotype: antisense
Gene id: ENSG00000254960
Gene Name: KIRREL3-AS2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
219-231
0.040
3
RP11-122M14.1
hsa-miR-128-3p
0.856
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000421933
Biotype: antisense
Gene id: ENSG00000231057
Gene Name: RP11-122M14.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1605-1629
0.040
0
XLOC_004458
hsa-miR-128-3p
0.855
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010734
Biotype: transcript isomorph
Gene id: XLOC_004458
Gene Name: XLOC_004458
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
134-140
0.040
1
RP11-20J15.2
hsa-miR-128-3p
0.855
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000437014
Biotype: lincRNA
Gene id: ENSG00000237590
Gene Name: RP11-20J15.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer+wobble
323-342
0.017
2
8mer
228-249
0.014
1
6mer
58-68
0.003
1
6mer
490-503
0.003
2
6mer
383-397
0.003
2
RP11-704J17.5
hsa-miR-128-3p
0.855
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000606160
Biotype: lincRNA
Gene id: ENSG00000272428
Gene Name: RP11-704J17.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
292-303
0.040
1
AC078942.1
hsa-miR-128-3p
0.854
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000448698
Biotype: antisense
Gene id: ENSG00000225365
Gene Name: AC078942.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
394-408
0.013
0
8mer
465-485
0.008
1
7mer
542-555
0.007
0
7mer
500-520
0.006
0
7mer
423-443
0.005
0
TTLL7-IT1
hsa-miR-128-3p
0.853
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000455929
Biotype: sense_intronic
Gene id: ENSG00000233061
Gene Name: TTLL7-IT1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
664-685
0.039
2
NUP50-AS1
hsa-miR-128-3p
0.852
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000609284
Biotype: lincRNA
Gene id: ENSG00000226328
Gene Name: NUP50-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
622-633
0.037
0
6mer
75-88
0.003
Not Conserved
RP11-10K16.1
hsa-miR-128-3p
0.852
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000500914
Biotype: antisense
Gene id: ENSG00000245213
Gene Name: RP11-10K16.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
33-39
0.024
3
7mer
447-459
0.013
4
6mer
160-181
0.003
1
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