LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-128-3p


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Gene
miRNA
Score
DIANA Links
XLOC_003775
hsa-miR-128-3p
0.865
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008319
Biotype: transcript isomorph
Gene id: XLOC_003775
Gene Name: XLOC_003775
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1676-1696
0.018
1
8mer
1656-1667
0.015
1
6mer
1848-1867
0.003
0
6mer
1666-1676
0.003
5
6mer
1538-1557
0.003
0
RP11-17A4.2
hsa-miR-128-3p
0.865
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000522511
Biotype: antisense
Gene id: ENSG00000254254
Gene Name: RP11-17A4.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
515-542
0.041
2
AC104534.2
hsa-miR-128-3p
0.865
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000594558
Biotype: antisense
Gene id: ENSG00000268756
Gene Name: AC104534.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
80-98
0.036
0
6mer
303-319
0.005
1
LINC01266
hsa-miR-128-3p
0.865
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000420823
Biotype: lincRNA
Gene id: ENSG00000224957
Gene Name: LINC01266
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
3861-3875
0.033
1
6mer
3912-3925
0.006
1
6mer
1023-1035
0.002
1
RP11-734K21.5
hsa-miR-128-3p
0.865
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000565044
Biotype: lincRNA
Gene id: ENSG00000261104
Gene Name: RP11-734K21.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
291-316
0.021
2
7mer
1977-2002
0.006
1
7mer
713-727
0.004
1
6mer
115-125
0.003
1
6mer
2919-2943
0.003
1
6mer
1585-1610
0.002
1
6mer
1782-1789
0.001
1
6mer
1610-1624
0.000
1
AC090044.1
hsa-miR-128-3p
0.865
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: NR_110118.1
Biotype: lincRNA
Gene id: NR_110118.1 (gene)
Gene Name: AC090044.1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
3764-3778
0.033
1
6mer
3815-3828
0.006
1
6mer
926-938
0.003
1
CTA-989H11.1
hsa-miR-128-3p
0.864
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000609564
Biotype: lincRNA
Gene id: ENSG00000273366
Gene Name: CTA-989H11.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
579-585
0.041
1
LINC00989
hsa-miR-128-3p
0.864
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000508174
Biotype: lincRNA
Gene id: ENSG00000250334
Gene Name: LINC00989
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1566-1581
0.035
1
6mer
77-89
0.003
1
6mer
272-298
0.002
1
LOC100996249
hsa-miR-128-3p
0.864
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_110159.1
Biotype: lincRNA
Gene id: NR_110159.1 (gene)
Gene Name: LOC100996249
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
467-489
0.020
1
7mer
268-287
0.020
0
RP11-84C10.4
hsa-miR-128-3p
0.864
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000557335
Biotype: antisense
Gene id: ENSG00000258471
Gene Name: RP11-84C10.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
368-390
0.039
4
6mer
425-449
0.002
1
LINC01015
hsa-miR-128-3p
0.864
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000434657
Biotype: antisense
Gene id: ENSG00000224582
Gene Name: LINC01015
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
338-363
0.032
1
7mer
896-917
0.009
1
LINC01485
hsa-miR-128-3p
0.863
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000522731
Biotype: lincRNA
Gene id: ENSG00000254211
Gene Name: LINC01485
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
227-248
0.041
0
XLOC_007089
hsa-miR-128-3p
0.863
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00015015
Biotype: transcript isomorph
Gene id: XLOC_007089
Gene Name: XLOC_007089
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Kidney Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
11050-11063
0.009
0
7mer
1941-1946
0.008
0
6mer
1187-1201
0.007
1
8mer+wobble
619-640
0.005
Not Conserved
7mer
8369-8387
0.005
0
6mer
10714-10729
0.003
0
8mer
7379-7392
0.002
Not Conserved
6mer
539-549
0.002
Not Conserved
6mer
6242-6258
0.001
Not Conserved
RP11-884K10.7
hsa-miR-128-3p
0.862
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000607783
Biotype: antisense
Gene id: ENSG00000271976
Gene Name: RP11-884K10.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2149-2167
0.019
0
7mer
78-98
0.015
0
7mer
1937-1953
0.006
0
RP11-372M18.2
hsa-miR-128-3p
0.861
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000443636
Biotype: lincRNA
Gene id: ENSG00000231648
Gene Name: RP11-372M18.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
644-666
0.029
3
7mer
46-61
0.007
1
6mer
596-608
0.004
Not Conserved
CTB-158E9.1
hsa-miR-128-3p
0.861
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000518984
Biotype: lincRNA
Gene id: ENSG00000254293
Gene Name: CTB-158E9.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1656-1674
0.034
4
6mer
1108-1129
0.003
1
6mer
291-315
0.003
1
TMEM254-AS1
hsa-miR-128-3p
0.861
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000432070
Biotype: antisense
Gene id: ENSG00000230091
Gene Name: TMEM254-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2030-2045
0.018
3
7mer
1809-1831
0.006
Not Conserved
7mer
253-277
0.005
0
7mer
1683-1710
0.004
0
6mer
606-619
0.002
0
6mer
1178-1194
0.002
0
6mer
473-486
0.002
0
6mer
2135-2151
0.001
Not Conserved
ZNRD1-AS1
hsa-miR-128-3p
0.861
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000444051
Biotype: antisense
Gene id: ENSG00000204623
Gene Name: ZNRD1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
5902-5919
0.029
1
6mer
1253-1278
0.004
1
6mer
6398-6415
0.003
1
6mer
4364-4380
0.002
0
6mer
4616-4640
0.002
0
6mer
6805-6828
0.001
Not Conserved
RP11-96A15.1
hsa-miR-128-3p
0.861
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000619331
Biotype: lincRNA
Gene id: ENSG00000278464
Gene Name: RP11-96A15.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
135-154
0.036
1
6mer
320-346
0.005
1
XLOC_011061
hsa-miR-128-3p
0.860
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022777
Biotype: transcript isomorph
Gene id: XLOC_011061
Gene Name: XLOC_011061
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
281-293
0.022
2
7mer
195-205
0.018
2
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