LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-128-3p


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Gene
miRNA
Score
DIANA Links
RP11-508N22.13
hsa-miR-128-3p
0.869
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000609019
Biotype: lincRNA
Gene id: ENSG00000273019
Gene Name: RP11-508N22.13
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
74-89
0.042
0
AC069363.1
hsa-miR-128-3p
0.869
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000616926
Biotype: antisense
Gene id: ENSG00000277089
Gene Name: AC069363.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
149-175
0.042
1
AL133249.1
hsa-miR-128-3p
0.869
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000416279
Biotype: lincRNA
Gene id: ENSG00000223647
Gene Name: AL133249.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
128-150
0.042
0
LINC00649
hsa-miR-128-3p
0.868
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000427447
Biotype: antisense
Gene id: ENSG00000237945
Gene Name: LINC00649
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
976-988
0.015
1
8mer
1256-1268
0.009
2
8mer
6632-6646
0.009
0
6mer
9030-9042
0.003
1
6mer
5109-5121
0.002
4
6mer
3480-3500
0.002
0
6mer
6816-6830
0.001
0
6mer
6928-6952
0.001
2
CTD-2218G20.2
hsa-miR-128-3p
0.868
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000507693
Biotype: lincRNA
Gene id: ENSG00000248279
Gene Name: CTD-2218G20.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
338-357
0.037
2
6mer
421-441
0.004
0
RP11-476K15.1
hsa-miR-128-3p
0.868
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000583163
Biotype: lincRNA
Gene id: ENSG00000266602
Gene Name: RP11-476K15.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
656-668
0.036
1
6mer
70-84
0.005
1
CTA-445C9.15
hsa-miR-128-3p
0.867
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000564772
Biotype: lincRNA
Gene id: ENSG00000260065
Gene Name: CTA-445C9.15
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
506-529
0.038
0
6mer
256-266
0.002
Not Conserved
6mer
1955-1970
0.001
0
AC000370.2
hsa-miR-128-3p
0.867
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000488818
Biotype: antisense
Gene id: ENSG00000241921
Gene Name: AC000370.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
326-342
0.030
0
7mer
382-395
0.008
1
6mer
447-473
0.004
0
RP11-88I18.2
hsa-miR-128-3p
0.867
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000446984
Biotype: antisense
Gene id: ENSG00000233178
Gene Name: RP11-88I18.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
452-478
0.041
0
RP1-17K7.1
hsa-miR-128-3p
0.866
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000533832
Biotype: sense_intronic
Gene id: ENSG00000254627
Gene Name: RP1-17K7.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
167-183
0.041
0
RBFADN
hsa-miR-128-3p
0.866
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000566810
Biotype: lincRNA
Gene id: ENSG00000261126
Gene Name: RBFADN
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
328-346
0.038
1
6mer
420-434
0.003
1
XLOC_009464
hsa-miR-128-3p
0.866
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019172
Biotype: transcript isomorph
Gene id: XLOC_009464
Gene Name: XLOC_009464
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
509-534
0.041
0
AC008103.4
hsa-miR-128-3p
0.866
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623570
Biotype: sense_intronic
Gene id: ENSG00000279987
Gene Name: AC008103.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
423-436
0.041
1
XLOC_009756
hsa-miR-128-3p
0.866
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020159
Biotype: transcript isomorph
Gene id: XLOC_009756
Gene Name: XLOC_009756
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
979-990
0.029
1
9mer
487-501
0.013
0
CTD-2023J5.1
hsa-miR-128-3p
0.866
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000532973
Biotype: sense_intronic
Gene id: ENSG00000255076
Gene Name: CTD-2023J5.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
85-105
0.041
1
LINC00608
hsa-miR-128-3p
0.866
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000432733
Biotype: lincRNA
Gene id: ENSG00000236445
Gene Name: LINC00608
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2561-2579
0.025
Not Conserved
7mer
1023-1028
0.006
4
6mer
198-217
0.004
0
7mer
972-990
0.003
Not Conserved
7mer
1956-1978
0.002
0
LINC00592
hsa-miR-128-3p
0.866
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000549830
Biotype: lincRNA
Gene id: ENSG00000258279
Gene Name: LINC00592
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
776-787
0.028
1
9mer
482-496
0.013
0
FAM224A
hsa-miR-128-3p
0.865
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: ENST00000419557
Biotype: lincRNA
Gene id: ENSG00000233522
Gene Name: FAM224A
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
726-737
0.041
0
XLOC_002041
hsa-miR-128-3p
0.865
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004193
Biotype: transcript isomorph
Gene id: XLOC_002041
Gene Name: XLOC_002041
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Heart Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
699-718
0.024
1
8mer
347-359
0.011
0
6mer
17-41
0.003
0
6mer
1433-1443
0.003
1
RP11-15A1.3
hsa-miR-128-3p
0.865
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000587128
Biotype: lincRNA
Gene id: ENSG00000267058
Gene Name: RP11-15A1.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1859-1876
0.023
0
6mer
1969-1984
0.005
1
6mer
1548-1561
0.004
1
6mer
1978-1999
0.004
1
7mer
1234-1251
0.003
Not Conserved
6mer
1286-1311
0.002
0
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