LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-128-3p


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Gene
miRNA
Score
DIANA Links
RP11-669N7.2
hsa-miR-128-3p
0.874
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000512133
Biotype: retained_intron
Gene id: ENSG00000249196
Gene Name: RP11-669N7.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1878-1890
0.023
0
8mer
1293-1320
0.010
0
7mer
1713-1736
0.007
0
6mer
639-659
0.002
0
XLOC_006035
hsa-miR-128-3p
0.874
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013404
Biotype: transcript isomorph
Gene id: XLOC_006035
Gene Name: XLOC_006035
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
859-875
0.021
2
8mer+wobble
1284-1307
0.009
0
6mer
3156-3179
0.007
3
6mer
2323-2347
0.003
1
6mer
1730-1749
0.002
1
RP11-1391J7.1
hsa-miR-128-3p
0.874
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000506172
Biotype: antisense
Gene id: ENSG00000250397
Gene Name: RP11-1391J7.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
171-196
0.036
3
7mer
1368-1382
0.006
0
RP11-96K19.4
hsa-miR-128-3p
0.874
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000562952
Biotype: sense_overlapping
Gene id: ENSG00000261654
Gene Name: RP11-96K19.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
140-160
0.036
1
6mer
3097-3124
0.005
1
8mer+wobble
2992-3009
0.001
Not Conserved
RP11-648L3.2
hsa-miR-128-3p
0.873
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000518536
Biotype: lincRNA
Gene id: ENSG00000253116
Gene Name: RP11-648L3.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
517-535
0.039
1
6mer
105-122
0.004
1
AC003003.5
hsa-miR-128-3p
0.873
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000468219
Biotype: sense_intronic
Gene id: ENSG00000188477
Gene Name: AC003003.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
149-171
0.036
1
7mer
1491-1505
0.006
0
CTD-2291D10.2
hsa-miR-128-3p
0.873
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000565584
Biotype: lincRNA
Gene id: ENSG00000261558
Gene Name: CTD-2291D10.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
371-396
0.042
0
AC108488.4
hsa-miR-128-3p
0.873
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000438482
Biotype: lincRNA
Gene id: ENSG00000242282
Gene Name: AC108488.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
286-304
0.038
0
6mer
541-556
0.002
Not Conserved
6mer
101-128
0.002
Not Conserved
FLJ31356
hsa-miR-128-3p
0.872
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000427929
Biotype: antisense
Gene id: ENSG00000229951
Gene Name: FLJ31356
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
66-89
0.031
Not Conserved
6mer
318-337
0.004
3
7mer
1346-1360
0.003
1
6mer
2142-2164
0.002
1
6mer
1652-1673
0.002
0
C22orf34
hsa-miR-128-3p
0.872
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000405854
Biotype: lincRNA
Gene id: ENSG00000188511
Gene Name: C22orf34
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
245-270
0.016
1
7mer
1565-1580
0.011
1
8mer
206-226
0.010
1
7mer
282-308
0.005
1
RP11-1085N6.2
hsa-miR-128-3p
0.872
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000555924
Biotype: antisense
Gene id: ENSG00000258428
Gene Name: RP11-1085N6.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
368-377
0.042
11
XLOC_007009
hsa-miR-128-3p
0.872
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014511
Biotype: transcript isomorph
Gene id: XLOC_007009
Gene Name: XLOC_007009
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
820-831
0.020
1
9mer
831-853
0.019
Not Conserved
6mer
170-183
0.003
1
LOC100506714
hsa-miR-128-3p
0.871
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: NR_038957.1
Biotype: lincRNA
Gene id: NR_038957.1 (gene)
Gene Name: LOC100506714
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1227-1238
0.034
0
6mer
334-346
0.003
0
6mer
167-192
0.003
Not Conserved
6mer
680-693
0.002
Not Conserved
AP001372.2
hsa-miR-128-3p
0.871
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000612462
Biotype: lincRNA
Gene id: ENSG00000254837
Gene Name: AP001372.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
232-244
0.042
0
RP11-25I15.3
hsa-miR-128-3p
0.870
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000550177
Biotype: lincRNA
Gene id: ENSG00000257114
Gene Name: RP11-25I15.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
372-388
0.042
4
ENOX1-AS1
hsa-miR-128-3p
0.870
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000444442
Biotype: lincRNA
Gene id: ENSG00000233821
Gene Name: ENOX1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3687-3703
0.042
3
RP5-1157M23.2
hsa-miR-128-3p
0.869
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000464958
Biotype: antisense
Gene id: ENSG00000243224
Gene Name: RP5-1157M23.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
Fibroblasts Foreskin Normal/Primary
Fibroblasts Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
198-210
0.029
3
7mer
821-835
0.013
2
RP5-1119A7.17
hsa-miR-128-3p
0.869
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000562756
Biotype: sense_overlapping
Gene id: ENSG00000261675
Gene Name: RP5-1119A7.17
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1311-1323
0.035
10
6mer
1442-1469
0.004
4
6mer
1094-1113
0.003
1
XLOC_007504
hsa-miR-128-3p
0.869
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016117
Biotype: transcript isomorph
Gene id: XLOC_007504
Gene Name: XLOC_007504
UCSC graphic: -
Expression:
  Cell Line Tissue Category
Fibroblasts Lung Normal/Primary
- Ovary Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
387-408
0.042
Not Conserved
LINC00969
hsa-miR-128-3p
0.869
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000602127
Biotype: lincRNA
Gene id: ENSG00000242086
Gene Name: LINC00969
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
154-174
0.026
Not Conserved
7mer
707-727
0.012
3
6mer
204-219
0.004
6
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