LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-128-3p


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Gene
miRNA
Score
DIANA Links
HAND2-AS1
hsa-miR-128-3p
0.878
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000512099
Biotype: antisense
Gene id: ENSG00000237125
Gene Name: HAND2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
77-88
0.041
6
6mer
1418-1435
0.002
2
RPA3-AS1
hsa-miR-128-3p
0.878
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_034084.1
Biotype: sense
Gene id: NR_034084.1 (gene)
Gene Name: RPA3-AS1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
889-900
0.018
7
7mer
1748-1774
0.017
5
6mer
568-580
0.008
8
XLOC_009734
hsa-miR-128-3p
0.878
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020407
Biotype: transcript isomorph
Gene id: XLOC_009734
Gene Name: XLOC_009734
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
114-138
0.040
1
6mer
1763-1780
0.003
1
AC009502.4
hsa-miR-128-3p
0.877
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000416861
Biotype: lincRNA
Gene id: ENSG00000227308
Gene Name: AC009502.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
409-421
0.026
1
7mer
314-329
0.009
1
7mer
168-183
0.008
1
LOC283045
hsa-miR-128-3p
0.877
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: NR_104162.1
Biotype: antisense
Gene id: NR_104162.1 (gene)
Gene Name: LOC283045
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2351-2369
0.040
1
6mer
1721-1735
0.003
1
RP11-252C15.1
hsa-miR-128-3p
0.876
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000530228
Biotype: lincRNA
Gene id: ENSG00000254813
Gene Name: RP11-252C15.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
636-647
0.020
1
9mer
647-669
0.019
Not Conserved
6mer
171-184
0.003
1
LINC00087
hsa-miR-128-3p
0.876
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000433425
Biotype: lincRNA
Gene id: ENSG00000196972
Gene Name: LINC00087
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
78-91
0.034
1
8mer
1834-1855
0.008
1
AC006116.21
hsa-miR-128-3p
0.876
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000591630
Biotype: lincRNA
Gene id: ENSG00000267606
Gene Name: AC006116.21
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
615-628
0.043
1
TMEM254-AS1
hsa-miR-128-3p
0.876
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000412298
Biotype: antisense
Gene id: ENSG00000230091
Gene Name: TMEM254-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2979-2994
0.019
3
7mer
644-658
0.007
1
7mer
2671-2693
0.005
Not Conserved
7mer
2545-2572
0.004
0
7mer
1115-1139
0.003
0
6mer
2040-2056
0.002
0
6mer
3084-3100
0.001
Not Conserved
6mer
1468-1481
0.001
0
6mer
1335-1348
0.001
0
SLC14A2-AS1
hsa-miR-128-3p
0.876
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000585759
Biotype: antisense
Gene id: ENSG00000267097
Gene Name: SLC14A2-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
194-209
0.037
2
6mer
136-153
0.005
5
FAM66B
hsa-miR-128-3p
0.875
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000606573
Biotype: lincRNA
Gene id: ENSG00000215374
Gene Name: FAM66B
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HREpiC Kidney Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
683-695
0.033
1
7mer
1983-2009
0.008
0
6mer
1989-2010
0.002
Not Conserved
LOC102467080
hsa-miR-128-3p
0.875
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: NR_104659.1
Biotype: lincRNA
Gene id: NR_104659.1 (gene)
Gene Name: LOC102467080
UCSC graphic: -
Expression:
  Cell Line Tissue Category
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
52-78
0.025
Not Conserved
7mer
23-36
0.018
1
CTD-2161F6.2
hsa-miR-128-3p
0.875
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000506059
Biotype: lincRNA
Gene id: ENSG00000248311
Gene Name: CTD-2161F6.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
35-51
0.038
1
6mer
383-393
0.004
2
RP11-266K4.14
hsa-miR-128-3p
0.875
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000618256
Biotype: lincRNA
Gene id: ENSG00000275367
Gene Name: RP11-266K4.14
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2436-2457
0.021
0
6mer
315-337
0.013
1
6mer
524-536
0.007
1
6mer
1178-1198
0.002
0
XLOC_000601
hsa-miR-128-3p
0.874
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001320
Biotype: transcript isomorph
Gene id: XLOC_000601
Gene Name: XLOC_000601
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
264-279
0.040
0
6mer
85-109
0.002
Not Conserved
LINC00562
hsa-miR-128-3p
0.874
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000566385
Biotype: lincRNA
Gene id: ENSG00000260388
Gene Name: LINC00562
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2061-2079
0.035
5
7mer
1157-1168
0.007
3
FLJ31356
hsa-miR-128-3p
0.874
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000445878
Biotype: antisense
Gene id: ENSG00000229951
Gene Name: FLJ31356
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
66-89
0.031
Not Conserved
6mer
318-337
0.004
3
7mer
1346-1360
0.004
1
6mer
2142-2164
0.002
1
6mer
1652-1673
0.001
0
LINC00608
hsa-miR-128-3p
0.874
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000419101
Biotype: lincRNA
Gene id: ENSG00000236445
Gene Name: LINC00608
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2153-2158
0.020
4
8mer
655-674
0.009
1
7mer
2102-2120
0.007
Not Conserved
6mer
852-871
0.002
0
6mer
669-679
0.002
1
6mer
1287-1304
0.002
0
6mer
626-639
0.002
1
XLOC_006928
hsa-miR-128-3p
0.874
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014859
Biotype: transcript isomorph
Gene id: XLOC_006928
Gene Name: XLOC_006928
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
147-168
0.039
1
6mer
49-60
0.003
1
XLOC_000974
hsa-miR-128-3p
0.874
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00002447
Biotype: transcript isomorph
Gene id: XLOC_000974
Gene Name: XLOC_000974
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Colon Normal/Primary
- Kidney Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
197-219
0.042
0
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