LncBase Predicted v.2
Help
Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
Bulk download:
We have updated the bulk download module, which simplifies the download process! Please find the new online form by following this link
Deprecated!
This version is deprecated. Users are strongly advised to only use the latest, up-to-date versions of DIANA-Tools and Databases.
Please follow this link to navigate to the latest database version.

hsa-miR-128-3p


or   Search by location
Loading... Please wait, this might take a few seconds...



Go to Experimental module
Filters

Gene
miRNA
Score
DIANA Links
XLOC_010584
hsa-miR-128-3p
0.884
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021981
Biotype: transcript isomorph
Gene id: XLOC_010584
Gene Name: XLOC_010584
UCSC graphic: -
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
Fibroblasts Lung Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
247-258
0.038
2
6mer
456-468
0.003
0
6mer
925-940
0.003
1
RP11-774D14.1
hsa-miR-128-3p
0.883
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000502427
Biotype: lincRNA
Gene id: ENSG00000251629
Gene Name: RP11-774D14.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1627-1653
0.019
1
8mer
730-745
0.012
2
8mer+wobble
1298-1321
0.008
1
7mer
506-517
0.003
Not Conserved
6mer
905-919
0.002
1
CFAP44-AS1
hsa-miR-128-3p
0.883
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000498480
Biotype: antisense
Gene id: ENSG00000243849
Gene Name: CFAP44-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
87-95
0.040
1
6mer
288-309
0.004
1
CTD-2544M6.2
hsa-miR-128-3p
0.883
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000560195
Biotype: lincRNA
Gene id: ENSG00000259611
Gene Name: CTD-2544M6.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
338-359
0.029
0
7mer
218-242
0.012
0
6mer
409-434
0.003
Not Conserved
RP11-109I13.2
hsa-miR-128-3p
0.882
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000601195
Biotype: retained_intron
Gene id: ENSG00000235020
Gene Name: RP11-109I13.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
197-214
0.044
3
RP11-1029J19.4
hsa-miR-128-3p
0.882
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000553270
Biotype: lincRNA
Gene id: ENSG00000258919
Gene Name: RP11-1029J19.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
476-500
0.044
1
CTA-342B11.3
hsa-miR-128-3p
0.882
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624235
Biotype: lincRNA
Gene id: ENSG00000280370
Gene Name: CTA-342B11.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
99-114
0.007
1
7mer
16725-16730
0.007
0
7mer
24190-24198
0.005
Not Conserved
7mer
14112-14124
0.004
1
7mer
20365-20376
0.003
1
6mer
24157-24179
0.003
0
6mer
3395-3412
0.002
4
7mer
13269-13291
0.002
0
6mer
2042-2058
0.002
1
7mer
18031-18051
0.002
Not Conserved
6mer
23394-23409
0.001
Not Conserved
6mer
13628-13636
0.001
1
6mer
5718-5736
0.001
0
6mer
14584-14601
0.001
1
6mer
23207-23225
0.001
Not Conserved
6mer
17027-17052
0.001
Not Conserved
7mer
23231-23246
0.001
Not Conserved
RP11-285A1.1
hsa-miR-128-3p
0.882
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000566715
Biotype: lincRNA
Gene id: ENSG00000260988
Gene Name: RP11-285A1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
471-482
0.041
1
6mer
534-547
0.003
1
RP4-545C24.1
hsa-miR-128-3p
0.881
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000460955
Biotype: antisense
Gene id: ENSG00000244198
Gene Name: RP4-545C24.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
491-512
0.036
1
6mer
529-546
0.008
3
XLOC_003240
hsa-miR-128-3p
0.881
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006650
Biotype: transcript isomorph
Gene id: XLOC_003240
Gene Name: XLOC_003240
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
8821-8838
0.017
1
7mer
8746-8751
0.007
2
6mer
137-158
0.003
0
6mer
578-588
0.003
1
6mer
292-315
0.003
0
7mer
1045-1064
0.003
1
7mer
1305-1324
0.002
1
6mer
1128-1143
0.001
1
6mer
1170-1188
0.001
0
6mer
7493-7514
0.001
1
7mer
7479-7493
0.001
1
6mer
5911-5929
0.001
1
6mer
3502-3525
0.001
0
6mer
7472-7493
0.000
0
RP11-396N11.1
hsa-miR-128-3p
0.881
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000592121
Biotype: lincRNA
Gene id: ENSG00000267401
Gene Name: RP11-396N11.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
69-87
0.035
0
6mer
248-275
0.008
3
XLOC_013272
hsa-miR-128-3p
0.881
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027233
Biotype: transcript isomorph
Gene id: XLOC_013272
Gene Name: XLOC_013272
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
488-513
0.036
0
6mer
617-629
0.008
0
PVT1
hsa-miR-128-3p
0.881
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000522875
Biotype: lincRNA
Gene id: ENSG00000249859
Gene Name: PVT1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
60-83
0.026
0
7mer
656-681
0.008
0
6mer
607-620
0.005
3
6mer
647-655
0.004
3
TSNAX-DISC1
hsa-miR-128-3p
0.881
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_028393.1
Biotype: sense
Gene id: NR_028393.1 (gene)
Gene Name: TSNAX-DISC1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
7165-7181
0.024
2
7mer
7084-7102
0.006
1
7mer
2939-2952
0.004
4
6mer
141-153
0.003
1
6mer
5736-5761
0.003
6
6mer
2693-2704
0.002
1
7mer
1022-1045
0.001
Not Conserved
6mer
6049-6065
0.001
0
6mer
1040-1054
0.001
2
MGC27345
hsa-miR-128-3p
0.881
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_046216.1
Biotype: sense
Gene id: NR_046216.1 (gene)
Gene Name: MGC27345
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
9573-9583
0.013
1
7mer
416-435
0.008
Not Conserved
7mer
661-672
0.006
0
7mer
9452-9458
0.005
0
8mer+wobble
3177-3204
0.003
0
6mer
9222-9231
0.003
0
6mer
1885-1893
0.002
1
6mer
2781-2806
0.002
1
6mer
3514-3530
0.001
2
6mer
4058-4071
0.001
1
6mer
3722-3748
0.001
Not Conserved
OIP5-AS1
hsa-miR-128-3p
0.880
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000500949
Biotype: antisense
Gene id: ENSG00000247556
Gene Name: OIP5-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
8573-8588
0.029
1
7mer
8093-8110
0.008
0
6mer
5878-5902
0.003
7
6mer
1969-1986
0.002
3
6mer
5320-5340
0.001
2
XLOC_002196
hsa-miR-128-3p
0.879
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004326
Biotype: transcript isomorph
Gene id: XLOC_002196
Gene Name: XLOC_002196
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Colon Normal/Primary
- Liver Normal/Primary
- Prostate Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
89-104
0.043
0
RP11-322J23.1
hsa-miR-128-3p
0.879
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000515840
Biotype: lincRNA
Gene id: ENSG00000250968
Gene Name: RP11-322J23.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
537-551
0.043
1
LINC00649
hsa-miR-128-3p
0.879
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000595747
Biotype: antisense
Gene id: ENSG00000237945
Gene Name: LINC00649
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
741-753
0.026
1
7mer
200-226
0.017
1
RP11-88I18.2
hsa-miR-128-3p
0.879
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000592778
Biotype: antisense
Gene id: ENSG00000233178
Gene Name: RP11-88I18.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
293-320
0.043
0
Funded by:
We have placed cookies on your device to help make this website and the services we offer better. By using this site, you agree to the use of cookies. Learn more
I accept