LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-128-3p


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Gene
miRNA
Score
DIANA Links
LINC01085
hsa-miR-128-3p
0.889
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000502759
Biotype: lincRNA
Gene id: ENSG00000248698
Gene Name: LINC01085
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1277-1290
0.043
2
6mer
1104-1113
0.002
1
RP1-179N16.6
hsa-miR-128-3p
0.889
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000499560
Biotype: antisense
Gene id: ENSG00000246982
Gene Name: RP1-179N16.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
951-967
0.025
1
7mer
614-631
0.020
3
RP11-242J7.1
hsa-miR-128-3p
0.889
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000522554
Biotype: lincRNA
Gene id: ENSG00000254233
Gene Name: RP11-242J7.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
47-62
0.045
2
XLOC_002841
hsa-miR-128-3p
0.889
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006248
Biotype: transcript isomorph
Gene id: XLOC_002841
Gene Name: XLOC_002841
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
239-261
0.045
2
RP11-242C19.2
hsa-miR-128-3p
0.889
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000497961
Biotype: sense_intronic
Gene id: ENSG00000241886
Gene Name: RP11-242C19.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
422-439
0.040
0
6mer
454-466
0.004
0
MUC19
hsa-miR-128-3p
0.889
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000454784
Biotype: processed_transcript
Gene id: ENSG00000205592
Gene Name: MUC19
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Testes Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
24164-24179
0.011
5
7mer
4655-4667
0.009
7
6mer
24152-24164
0.006
8
7mer
23689-23704
0.005
1
7mer
3042-3068
0.004
2
7mer
2887-2893
0.003
1
6mer
4000-4019
0.003
9
6mer
3342-3359
0.002
7
6mer
5978-5992
0.001
1
6mer
3411-3430
0.001
3
RP4-723E3.1
hsa-miR-128-3p
0.888
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: NR_110038.1
Biotype: lincRNA
Gene id: NR_110038.1 (gene)
Gene Name: RP4-723E3.1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4064-4082
0.013
1
7mer
394-411
0.009
1
7mer
997-1019
0.007
0
6mer
30-53
0.004
0
6mer
3987-4003
0.004
1
6mer
3349-3362
0.003
1
7mer
2446-2465
0.003
1
6mer
1676-1700
0.002
1
XLOC_008826
hsa-miR-128-3p
0.888
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018518
Biotype: transcript isomorph
Gene id: XLOC_008826
Gene Name: XLOC_008826
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Colon Normal/Primary
- Kidney Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4168-4193
0.020
0
7mer
4248-4266
0.015
0
6mer
3767-3785
0.004
0
6mer
2664-2689
0.003
1
6mer
3537-3554
0.003
0
6mer
2624-2634
0.000
0
XLOC_010279
hsa-miR-128-3p
0.888
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020261
Biotype: transcript isomorph
Gene id: XLOC_010279
Gene Name: XLOC_010279
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
137-164
0.039
0
6mer
1323-1338
0.006
0
RP11-944C7.1
hsa-miR-128-3p
0.888
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000553996
Biotype: lincRNA
Gene id: ENSG00000258792
Gene Name: RP11-944C7.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
105-125
0.045
0
XLOC_010275
hsa-miR-128-3p
0.888
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00021013
Biotype: transcript isomorph
Gene id: XLOC_010275
Gene Name: XLOC_010275
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
347-371
0.045
0
LINC01524
hsa-miR-128-3p
0.887
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000428009
Biotype: lincRNA
Gene id: ENSG00000234948
Gene Name: LINC01524
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
- Lymph Node Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4064-4082
0.013
1
7mer
394-411
0.009
1
7mer
997-1019
0.007
0
6mer
30-53
0.004
0
6mer
3987-4003
0.004
1
6mer
3349-3362
0.003
1
7mer
2446-2465
0.003
1
6mer
1676-1700
0.002
1
RP11-297L17.4
hsa-miR-128-3p
0.887
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000564331
Biotype: lincRNA
Gene id: ENSG00000261261
Gene Name: RP11-297L17.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
478-495
0.035
1
6mer
52-62
0.009
8
AC012593.1
hsa-miR-128-3p
0.886
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000606126
Biotype: lincRNA
Gene id: ENSG00000226994
Gene Name: AC012593.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
393-403
0.030
2
7mer
154-177
0.014
2
RP11-301G19.1
hsa-miR-128-3p
0.886
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000412872
Biotype: lincRNA
Gene id: ENSG00000227706
Gene Name: RP11-301G19.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1561-1575
0.041
0
6mer
121-136
0.003
Not Conserved
XLOC_010389
hsa-miR-128-3p
0.886
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021550
Biotype: transcript isomorph
Gene id: XLOC_010389
Gene Name: XLOC_010389
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
583-595
0.044
2
CTB-127C13.1
hsa-miR-128-3p
0.886
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000501818
Biotype: antisense
Gene id: ENSG00000247699
Gene Name: CTB-127C13.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
869-892
0.018
3
8mer
2358-2370
0.010
1
7mer
802-822
0.007
1
7mer
677-700
0.006
1
6mer
2486-2509
0.003
2
RP3-326I13.1
hsa-miR-128-3p
0.885
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000440955
Biotype: lincRNA
Gene id: ENSG00000224294
Gene Name: RP3-326I13.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2002-2027
0.017
1
7mer
2189-2203
0.014
1
6mer
658-671
0.004
2
6mer
1454-1475
0.004
2
6mer
1714-1729
0.003
1
6mer
790-814
0.002
1
RP11-99A1.2
hsa-miR-128-3p
0.885
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000590604
Biotype: lincRNA
Gene id: ENSG00000267311
Gene Name: RP11-99A1.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
862-870
0.035
10
7mer
167-179
0.009
0
RP11-1018N14.2
hsa-miR-128-3p
0.884
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000441895
Biotype: lincRNA
Gene id: ENSG00000225860
Gene Name: RP11-1018N14.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1454-1475
0.015
1
7mer
350-364
0.015
1
7mer
2149-2161
0.007
Not Conserved
6mer
435-449
0.002
1
8mer+mismatch
494-515
0.002
0
6mer
1654-1672
0.001
0
6mer
1165-1186
0.001
0
6mer
1470-1490
0.001
1
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