LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-128-3p


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Gene
miRNA
Score
DIANA Links
RP11-46E17.8
hsa-miR-128-3p
0.894
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624632
Biotype: lincRNA
Gene id: ENSG00000280391
Gene Name: RP11-46E17.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
8944-8962
0.013
0
8mer
3769-3786
0.012
1
8mer
3800-3818
0.005
1
8mer
6934-6945
0.005
0
6mer
541-567
0.004
3
7mer
1958-1981
0.002
1
6mer
3504-3512
0.002
4
6mer
5321-5338
0.002
1
6mer
1850-1872
0.001
0
RP11-944C7.1
hsa-miR-128-3p
0.893
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000555560
Biotype: lincRNA
Gene id: ENSG00000258792
Gene Name: RP11-944C7.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
85-105
0.045
0
RP11-736E3.1
hsa-miR-128-3p
0.893
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000441928
Biotype: lincRNA
Gene id: ENSG00000225457
Gene Name: RP11-736E3.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
368-389
0.032
1
7mer
309-330
0.009
2
6mer
346-368
0.004
1
XLOC_011256
hsa-miR-128-3p
0.893
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023409
Biotype: transcript isomorph
Gene id: XLOC_011256
Gene Name: XLOC_011256
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Kidney Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
478-503
0.039
4
6mer
1189-1205
0.007
2
CTD-2207A17.1
hsa-miR-128-3p
0.892
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000508853
Biotype: lincRNA
Gene id: ENSG00000248461
Gene Name: CTD-2207A17.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
HepG2 Liver Cancer/Malignant
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1859-1865
0.038
3
7mer
1252-1273
0.005
4
6mer
1117-1133
0.002
1
RP11-386M24.3
hsa-miR-128-3p
0.891
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000555864
Biotype: lincRNA
Gene id: ENSG00000258676
Gene Name: RP11-386M24.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
89-111
0.045
1
RP11-421L21.3
hsa-miR-128-3p
0.891
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000454721
Biotype: antisense
Gene id: ENSG00000233184
Gene Name: RP11-421L21.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
630-655
0.045
2
RP11-421L21.3
hsa-miR-128-3p
0.891
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000416329
Biotype: antisense
Gene id: ENSG00000233184
Gene Name: RP11-421L21.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
688-706
0.045
2
TMEM161B-AS1
hsa-miR-128-3p
0.891
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000507736
Biotype: antisense
Gene id: ENSG00000247828
Gene Name: TMEM161B-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
228-246
0.045
1
RP3-412A9.17
hsa-miR-128-3p
0.891
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623789
Biotype: sense_overlapping
Gene id: ENSG00000278920
Gene Name: RP3-412A9.17
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
14862-14880
0.013
0
7mer
14434-14444
0.008
4
7mer
6922-6944
0.004
2
7mer
9676-9695
0.003
0
7mer
3191-3214
0.003
1
6mer
593-617
0.003
0
7mer
8594-8608
0.002
0
6mer
8563-8580
0.002
1
6mer
12180-12194
0.002
1
6mer
4813-4836
0.001
1
6mer
6558-6584
0.001
1
6mer
4179-4196
0.001
2
6mer
5844-5868
0.001
Not Conserved
6mer
2729-2753
0.001
0
XLOC_005299
hsa-miR-128-3p
0.890
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011169
Biotype: transcript isomorph
Gene id: XLOC_005299
Gene Name: XLOC_005299
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1164-1189
0.042
2
6mer
361-373
0.003
0
AC012462.1
hsa-miR-128-3p
0.890
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000412951
Biotype: antisense
Gene id: ENSG00000230695
Gene Name: AC012462.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
100-116
0.045
0
CTD-2561J22.5
hsa-miR-128-3p
0.890
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000599993
Biotype: lincRNA
Gene id: ENSG00000268119
Gene Name: CTD-2561J22.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
28-40
0.045
0
GS1-5L10.1
hsa-miR-128-3p
0.890
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000522980
Biotype: antisense
Gene id: ENSG00000253576
Gene Name: GS1-5L10.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
309-315
0.037
0
6mer
32-46
0.008
12
GCSAML-AS1
hsa-miR-128-3p
0.890
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000420469
Biotype: antisense
Gene id: ENSG00000227135
Gene Name: GCSAML-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1522-1534
0.036
1
6mer
1568-1595
0.005
1
6mer
1449-1474
0.004
0
TMEM161B-AS1
hsa-miR-128-3p
0.889
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000506584
Biotype: antisense
Gene id: ENSG00000247828
Gene Name: TMEM161B-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
239-257
0.045
1
RP11-944C7.1
hsa-miR-128-3p
0.889
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000550332
Biotype: lincRNA
Gene id: ENSG00000258792
Gene Name: RP11-944C7.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
105-125
0.045
0
XLOC_000036
hsa-miR-128-3p
0.889
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001929
Biotype: transcript isomorph
Gene id: XLOC_000036
Gene Name: XLOC_000036
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
642-662
0.035
Not Conserved
7mer
178-188
0.008
1
6mer
421-441
0.002
1
RP11-98J9.1
hsa-miR-128-3p
0.889
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000531749
Biotype: lincRNA
Gene id: ENSG00000255411
Gene Name: RP11-98J9.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
360-376
0.045
1
XLOC_004822
hsa-miR-128-3p
0.889
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010334
Biotype: transcript isomorph
Gene id: XLOC_004822
Gene Name: XLOC_004822
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Breast Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Placenta Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
51-77
0.025
Not Conserved
7mer
22-35
0.019
1
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