LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-128-3p


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Gene
miRNA
Score
DIANA Links
RP11-586K12.10
hsa-miR-128-3p
0.910
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000570183
Biotype: lincRNA
Gene id: ENSG00000260311
Gene Name: RP11-586K12.10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2093-2105
0.032
0
6mer
304-329
0.014
0
6mer
810-833
0.002
Not Conserved
CTD-2008L17.1
hsa-miR-128-3p
0.910
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000588803
Biotype: lincRNA
Gene id: ENSG00000267327
Gene Name: CTD-2008L17.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
27-52
0.048
Not Conserved
MIAT
hsa-miR-128-3p
0.909
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000436238
Biotype: lincRNA
Gene id: ENSG00000225783
Gene Name: MIAT
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
685-701
0.048
2
XLOC_009375
hsa-miR-128-3p
0.909
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019576
Biotype: transcript isomorph
Gene id: XLOC_009375
Gene Name: XLOC_009375
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Heart Normal/Primary
- Skeletal Muscle Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
116-131
0.048
3
RP11-469M7.1
hsa-miR-128-3p
0.909
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000568571
Biotype: lincRNA
Gene id: ENSG00000260006
Gene Name: RP11-469M7.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2581-2595
0.045
7
6mer
2071-2097
0.003
0
RP11-87E22.2
hsa-miR-128-3p
0.908
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000511897
Biotype: antisense
Gene id: ENSG00000248738
Gene Name: RP11-87E22.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
3771-3796
0.037
1
7mer
1260-1275
0.004
1
7mer
1792-1811
0.004
3
7mer
1393-1404
0.003
1
RBFADN
hsa-miR-128-3p
0.908
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000562391
Biotype: lincRNA
Gene id: ENSG00000261126
Gene Name: RBFADN
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
881-899
0.035
1
7mer
503-521
0.005
1
6mer
236-252
0.003
1
6mer
973-987
0.003
1
6mer
133-144
0.002
Not Conserved
RP11-542K23.10
hsa-miR-128-3p
0.908
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000439471
Biotype: lincRNA
Gene id: ENSG00000233616
Gene Name: RP11-542K23.10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
43-62
0.048
Not Conserved
AP000344.3
hsa-miR-128-3p
0.907
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000449711
Biotype: lincRNA
Gene id: ENSG00000234928
Gene Name: AP000344.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
634-652
0.024
1
6mer
813-822
0.014
1
6mer
370-378
0.009
1
RP11-90B9.3
hsa-miR-128-3p
0.906
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000616598
Biotype: antisense
Gene id: ENSG00000273747
Gene Name: RP11-90B9.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
624-645
0.044
10
6mer
91-108
0.003
2
EIF3J-AS1
hsa-miR-128-3p
0.906
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000560049
Biotype: lincRNA
Gene id: ENSG00000179523
Gene Name: EIF3J-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
440-450
0.045
4
7mer
72-82
0.003
Not Conserved
XLOC_007164
hsa-miR-128-3p
0.906
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00015108
Biotype: transcript isomorph
Gene id: XLOC_007164
Gene Name: XLOC_007164
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
8-32
0.048
0
RP11-567C2.1
hsa-miR-128-3p
0.906
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000548722
Biotype: lincRNA
Gene id: ENSG00000257194
Gene Name: RP11-567C2.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
654-673
0.026
7
7mer
127-151
0.008
1
6mer
237-262
0.005
6
6mer
52-78
0.005
1
6mer
81-108
0.003
Not Conserved
XLOC_002455
hsa-miR-128-3p
0.905
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004551
Biotype: transcript isomorph
Gene id: XLOC_002455
Gene Name: XLOC_002455
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1307-1334
0.024
1
8mer
211-223
0.013
0
7mer
1245-1264
0.007
0
6mer
726-738
0.003
1
RP1-309I22.2
hsa-miR-128-3p
0.904
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624184
Biotype: sense_overlapping
Gene id: ENSG00000279338
Gene Name: RP1-309I22.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
28055-28077
0.008
1
7mer
22241-22259
0.008
1
8mer
8207-8225
0.006
1
7mer
9434-9456
0.005
1
7mer
7662-7676
0.003
1
7mer
18614-18635
0.002
0
7mer
16185-16202
0.002
1
6mer
23220-23229
0.002
4
6mer
13308-13317
0.002
1
6mer
4261-4285
0.002
2
6mer
10733-10744
0.002
0
6mer
10513-10523
0.001
1
6mer
27255-27266
0.001
3
6mer
18832-18843
0.001
0
6mer
2608-2632
0.001
1
7mer
12228-12242
0.001
1
6mer
25751-25773
0.001
2
6mer
3884-3897
0.001
0
CTD-2516F10.2
hsa-miR-128-3p
0.903
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000525534
Biotype: antisense
Gene id: ENSG00000251364
Gene Name: CTD-2516F10.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
185-199
0.028
1
7mer
445-466
0.015
1
6mer
236-252
0.005
1
XLOC_013263
hsa-miR-128-3p
0.903
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027223
Biotype: transcript isomorph
Gene id: XLOC_013263
Gene Name: XLOC_013263
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1072-1090
0.024
0
6mer
2582-2606
0.009
1
7mer
2877-2900
0.007
0
6mer
306-330
0.005
0
6mer
2469-2495
0.002
0
LINC00664
hsa-miR-128-3p
0.902
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000599078
Biotype: lincRNA
Gene id: ENSG00000268658
Gene Name: LINC00664
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3160-3178
0.033
0
8mer
801-819
0.014
0
XLOC_013278
hsa-miR-128-3p
0.902
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027248
Biotype: transcript isomorph
Gene id: XLOC_013278
Gene Name: XLOC_013278
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Colon Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1341-1353
0.047
0
RP11-369F10.2
hsa-miR-128-3p
0.902
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000412137
Biotype: antisense
Gene id: ENSG00000230575
Gene Name: RP11-369F10.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
272-298
0.047
6
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