LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-128-3p


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Gene
miRNA
Score
DIANA Links
RP11-167N24.6
hsa-miR-128-3p
0.916
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000549961
Biotype: lincRNA
Gene id: ENSG00000258247
Gene Name: RP11-167N24.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
142-163
0.050
0
LINC00266-1
hsa-miR-128-3p
0.916
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000279067
Biotype: lincRNA
Gene id: ENSG00000149656
Gene Name: LINC00266-1
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
839-849
0.027
Not Conserved
7mer
862-883
0.023
Not Conserved
RP11-326C3.10
hsa-miR-128-3p
0.916
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000534271
Biotype: antisense
Gene id: ENSG00000255089
Gene Name: RP11-326C3.10
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
58-69
0.025
0
8mer
175-186
0.025
0
LINC00518
hsa-miR-128-3p
0.915
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000496285
Biotype: lincRNA
Gene id: ENSG00000183674
Gene Name: LINC00518
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
351-368
0.039
1
7mer
1392-1407
0.008
2
6mer
655-671
0.003
1
LINC01297
hsa-miR-128-3p
0.915
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000621052
Biotype: lincRNA
Gene id: ENSG00000274827
Gene Name: LINC01297
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
929-949
0.025
0
8mer
3813-3832
0.008
Not Conserved
6mer
3919-3932
0.006
0
7mer
3440-3461
0.006
0
6mer
26-44
0.005
Not Conserved
AC011753.5
hsa-miR-128-3p
0.915
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000425576
Biotype: sense_intronic
Gene id: ENSG00000230696
Gene Name: AC011753.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
67-81
0.049
1
XLOC_008200
hsa-miR-128-3p
0.914
mTTBlnEmP

Gene Details
Chromosome: chrX
Transcript: TCONS_00017354
Biotype: transcript isomorph
Gene id: XLOC_008200
Gene Name: XLOC_008200
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
913-921
0.045
1
6mer
163-177
0.004
1
RP11-169F17.1
hsa-miR-128-3p
0.914
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000581862
Biotype: lincRNA
Gene id: ENSG00000263711
Gene Name: RP11-169F17.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3557-3575
0.028
0
7mer
534-561
0.013
1
7mer
2444-2471
0.006
1
6mer
2005-2024
0.002
1
RP11-351J23.2
hsa-miR-128-3p
0.914
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000609107
Biotype: lincRNA
Gene id: ENSG00000272549
Gene Name: RP11-351J23.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
408-427
0.045
Not Conserved
6mer
4449-4461
0.002
Not Conserved
6mer
1270-1280
0.001
0
6mer
3728-3753
0.001
Not Conserved
7mer
2179-2200
0.001
Not Conserved
RP11-286B14.1
hsa-miR-128-3p
0.913
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000440116
Biotype: lincRNA
Gene id: ENSG00000228971
Gene Name: RP11-286B14.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
440-466
0.049
0
AC012314.8
hsa-miR-128-3p
0.913
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000452097
Biotype: antisense
Gene id: ENSG00000237017
Gene Name: AC012314.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3442-3464
0.034
6
9mer
902-919
0.009
3
6mer
3865-3875
0.002
Not Conserved
6mer
970-980
0.002
0
6mer
2861-2879
0.001
1
6mer
2010-2033
0.001
Not Conserved
RP11-45A17.2
hsa-miR-128-3p
0.913
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000614406
Biotype: antisense
Gene id: ENSG00000277959
Gene Name: RP11-45A17.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
15-42
0.049
1
XLOC_001483
hsa-miR-128-3p
0.912
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003692
Biotype: transcript isomorph
Gene id: XLOC_001483
Gene Name: XLOC_001483
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
87-113
0.049
0
XLOC_009798
hsa-miR-128-3p
0.912
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020465
Biotype: transcript isomorph
Gene id: XLOC_009798
Gene Name: XLOC_009798
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
156-171
0.049
0
RP11-146N18.1
hsa-miR-128-3p
0.911
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000589376
Biotype: lincRNA
Gene id: ENSG00000267134
Gene Name: RP11-146N18.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1231-1237
0.026
3
8mer
68-85
0.011
1
7mer
913-940
0.007
1
6mer
1407-1426
0.004
1
RP11-147C23.1
hsa-miR-128-3p
0.911
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000451675
Biotype: lincRNA
Gene id: ENSG00000237435
Gene Name: RP11-147C23.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
592-611
0.049
2
RP11-553L6.5
hsa-miR-128-3p
0.911
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000570269
Biotype: lincRNA
Gene id: ENSG00000259976
Gene Name: RP11-553L6.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
262-280
0.034
12
6mer
377-392
0.009
11
6mer
1109-1119
0.005
7
RP11-147C23.1
hsa-miR-128-3p
0.910
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000412513
Biotype: lincRNA
Gene id: ENSG00000237435
Gene Name: RP11-147C23.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
430-449
0.049
2
RP11-230B22.1
hsa-miR-128-3p
0.910
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000453229
Biotype: antisense
Gene id: ENSG00000235545
Gene Name: RP11-230B22.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
877-891
0.030
1
8mer
538-555
0.013
1
6mer
1121-1133
0.006
1
RP11-358N2.2
hsa-miR-128-3p
0.910
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000612444
Biotype: lincRNA
Gene id: ENSG00000277692
Gene Name: RP11-358N2.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
357-363
0.041
3
6mer
235-248
0.008
3
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