LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-128-3p


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Gene
miRNA
Score
DIANA Links
RP11-250B2.3
hsa-miR-128-3p
0.922
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000427048
Biotype: lincRNA
Gene id: ENSG00000233967
Gene Name: RP11-250B2.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
294-309
0.042
2
7mer
207-231
0.009
1
RP11-148B18.4
hsa-miR-128-3p
0.922
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000414039
Biotype: lincRNA
Gene id: ENSG00000236098
Gene Name: RP11-148B18.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
- Kidney Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
534-559
0.051
1
SOX9-AS1
hsa-miR-128-3p
0.922
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000602213
Biotype: lincRNA
Gene id: ENSG00000234899
Gene Name: SOX9-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
460-487
0.037
0
7mer
18-44
0.009
1
6mer
340-354
0.005
0
XLOC_000294
hsa-miR-128-3p
0.922
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001027
Biotype: transcript isomorph
Gene id: XLOC_000294
Gene Name: XLOC_000294
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
9239-9266
0.039
2
7mer
8683-8697
0.004
0
7mer
8641-8654
0.003
2
6mer
8486-8506
0.003
0
6mer
1917-1939
0.002
0
CTA-445C9.14
hsa-miR-128-3p
0.921
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000565764
Biotype: antisense
Gene id: ENSG00000261188
Gene Name: CTA-445C9.14
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
247-260
0.019
1
7mer
295-319
0.018
1
7mer
104-125
0.007
0
6mer
120-139
0.004
1
6mer
600-623
0.004
0
RP11-313P18.1
hsa-miR-128-3p
0.921
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000557891
Biotype: antisense
Gene id: ENSG00000259296
Gene Name: RP11-313P18.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
43-59
0.051
1
LINC00661
hsa-miR-128-3p
0.921
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000549131
Biotype: retained_intron
Gene id: ENSG00000205396
Gene Name: LINC00661
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
401-422
0.035
1
8mer
86-112
0.008
Not Conserved
6mer
69-94
0.008
0
RP11-96A15.1
hsa-miR-128-3p
0.921
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000613388
Biotype: lincRNA
Gene id: ENSG00000278464
Gene Name: RP11-96A15.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
191-210
0.041
1
6mer
45-71
0.006
0
6mer
376-402
0.004
1
PROSER2-AS1
hsa-miR-128-3p
0.921
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000445498
Biotype: antisense
Gene id: ENSG00000225778
Gene Name: PROSER2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2332-2358
0.047
1
6mer
1887-1903
0.002
1
6mer
2484-2499
0.002
1
RP11-65L3.1
hsa-miR-128-3p
0.920
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000565104
Biotype: lincRNA
Gene id: ENSG00000260931
Gene Name: RP11-65L3.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1755-1765
0.048
4
6mer
1310-1327
0.002
3
RP11-495P10.8
hsa-miR-128-3p
0.920
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000434245
Biotype: lincRNA
Gene id: ENSG00000231196
Gene Name: RP11-495P10.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
140-155
0.051
0
LINC00342
hsa-miR-128-3p
0.920
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: NR_103734.1
Biotype: lincRNA
Gene id: NR_103734.1 (gene)
Gene Name: LINC00342
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2645-2666
0.019
0
8mer
2704-2728
0.015
0
8mer
2528-2551
0.009
0
6mer
375-393
0.004
0
6mer
1322-1345
0.002
0
6mer
1020-1035
0.002
Not Conserved
XLOC_009942
hsa-miR-128-3p
0.920
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020640
Biotype: transcript isomorph
Gene id: XLOC_009942
Gene Name: XLOC_009942
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
- Colon Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
37-51
0.027
0
7mer
1232-1244
0.015
0
6mer
143-164
0.008
1
RP11-90P5.5
hsa-miR-128-3p
0.919
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000476186
Biotype: antisense
Gene id: ENSG00000240015
Gene Name: RP11-90P5.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
360-382
0.051
1
RP11-123M21.1
hsa-miR-128-3p
0.919
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000546563
Biotype: lincRNA
Gene id: ENSG00000257948
Gene Name: RP11-123M21.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
62-75
0.047
1
6mer
158-175
0.003
2
RP11-88I18.2
hsa-miR-128-3p
0.919
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000609241
Biotype: antisense
Gene id: ENSG00000233178
Gene Name: RP11-88I18.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
699-725
0.050
0
XLOC_008331
hsa-miR-128-3p
0.918
mTTBlnEmP

Gene Details
Chromosome: chrY
Transcript: TCONS_00017598
Biotype: transcript isomorph
Gene id: XLOC_008331
Gene Name: XLOC_008331
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
429-451
0.050
0
AC144831.1
hsa-miR-128-3p
0.917
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000573312
Biotype: lincRNA
Gene id: ENSG00000261888
Gene Name: AC144831.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2297-2311
0.038
1
7mer
2401-2418
0.011
0
6mer
1352-1371
0.001
0
RP11-269C23.5
hsa-miR-128-3p
0.917
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000613838
Biotype: lincRNA
Gene id: ENSG00000277831
Gene Name: RP11-269C23.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
281-299
0.026
1
7mer
360-373
0.013
1
7mer
159-182
0.011
1
XLOC_009222
hsa-miR-128-3p
0.917
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019399
Biotype: transcript isomorph
Gene id: XLOC_009222
Gene Name: XLOC_009222
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
967-976
0.041
0
6mer
465-491
0.009
0
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