LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-128-3p


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Gene
miRNA
Score
DIANA Links
XLOC_003870
hsa-miR-128-3p
0.932
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00009022
Biotype: transcript isomorph
Gene id: XLOC_003870
Gene Name: XLOC_003870
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
433-447
0.053
1
RP11-473M10.3
hsa-miR-128-3p
0.931
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000611641
Biotype: lincRNA
Gene id: ENSG00000237378
Gene Name: RP11-473M10.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1237-1260
0.040
0
6mer
1065-1070
0.006
0
6mer
669-687
0.005
0
6mer
391-406
0.002
1
RP11-561E1.1
hsa-miR-128-3p
0.931
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000519364
Biotype: antisense
Gene id: ENSG00000253643
Gene Name: RP11-561E1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
447-465
0.053
1
MIAT
hsa-miR-128-3p
0.930
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000616469
Biotype: lincRNA
Gene id: ENSG00000225783
Gene Name: MIAT
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
847-863
0.025
2
8mer
282-301
0.023
1
6mer
6142-6156
0.002
1
6mer
3494-3512
0.001
1
6mer
4370-4390
0.001
1
6mer
5130-5145
0.001
Not Conserved
RP11-147C23.1
hsa-miR-128-3p
0.929
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000442558
Biotype: lincRNA
Gene id: ENSG00000237435
Gene Name: RP11-147C23.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
272-291
0.053
2
RP11-495P10.7
hsa-miR-128-3p
0.929
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000445201
Biotype: lincRNA
Gene id: ENSG00000244252
Gene Name: RP11-495P10.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
445-455
0.053
1
RP4-657D16.3
hsa-miR-128-3p
0.929
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000591675
Biotype: antisense
Gene id: ENSG00000266993
Gene Name: RP4-657D16.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
755-775
0.039
6
8mer
477-495
0.014
0
RP11-477N12.4
hsa-miR-128-3p
0.928
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000609065
Biotype: processed_transcript
Gene id: ENSG00000278944
Gene Name: RP11-477N12.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
121-128
0.053
3
XLOC_009252
hsa-miR-128-3p
0.928
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019442
Biotype: transcript isomorph
Gene id: XLOC_009252
Gene Name: XLOC_009252
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
202-214
0.034
0
7mer
250-263
0.015
1
6mer
273-286
0.004
2
ZNF561-AS1
hsa-miR-128-3p
0.928
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000586943
Biotype: retained_intron
Gene id: ENSG00000267106
Gene Name: ZNF561-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1886-1901
0.020
0
8mer+mismatch
450-464
0.018
0
9mer
1240-1256
0.015
Not Conserved
RP5-1022J11.2
hsa-miR-128-3p
0.928
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000416237
Biotype: lincRNA
Gene id: ENSG00000232465
Gene Name: RP5-1022J11.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
114-134
0.052
2
XLOC_010468
hsa-miR-128-3p
0.928
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021869
Biotype: transcript isomorph
Gene id: XLOC_010468
Gene Name: XLOC_010468
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
166-185
0.028
0
9mer
266-287
0.025
0
CTA-929C8.9
hsa-miR-128-3p
0.927
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624278
Biotype: sense_intronic
Gene id: ENSG00000279185
Gene Name: CTA-929C8.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2525-2537
0.015
0
8mer
4595-4612
0.007
0
7mer
3282-3303
0.004
0
8mer
4366-4391
0.004
1
7mer
17211-17226
0.003
1
7mer
8111-8126
0.002
1
7mer
6467-6479
0.002
0
6mer
6983-6996
0.002
0
6mer
11959-11971
0.002
1
6mer
7628-7642
0.002
1
6mer
6012-6031
0.002
1
6mer
19877-19889
0.001
0
6mer
9816-9829
0.001
0
6mer
12086-12112
0.001
1
6mer
2680-2695
0.001
1
6mer
14627-14644
0.001
1
6mer
12637-12658
0.001
0
6mer
2687-2708
0.000
0
RP11-507K2.6
hsa-miR-128-3p
0.927
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000617439
Biotype: sense_intronic
Gene id: ENSG00000278576
Gene Name: RP11-507K2.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2341-2357
0.027
2
8mer
230-243
0.017
1
6mer
3054-3080
0.005
1
6mer
2472-2491
0.002
1
6mer
920-935
0.002
1
TTTY6
hsa-miR-128-3p
0.926
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: ENST00000253838
Biotype: lincRNA
Gene id: ENSG00000131538
Gene Name: TTTY6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
330-352
0.052
0
CTC-359M8.3
hsa-miR-128-3p
0.925
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000508845
Biotype: sense_intronic
Gene id: ENSG00000271724
Gene Name: CTC-359M8.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
318-344
0.052
0
XLOC_005501
hsa-miR-128-3p
0.925
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012617
Biotype: transcript isomorph
Gene id: XLOC_005501
Gene Name: XLOC_005501
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1196-1221
0.052
1
XLOC_005277
hsa-miR-128-3p
0.924
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011801
Biotype: transcript isomorph
Gene id: XLOC_005277
Gene Name: XLOC_005277
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
477-497
0.036
7
7mer
82-106
0.015
2
RP11-789C17.5
hsa-miR-128-3p
0.924
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000579805
Biotype: antisense
Gene id: ENSG00000263970
Gene Name: RP11-789C17.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
99-123
0.051
6
RP11-286B14.1
hsa-miR-128-3p
0.923
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000411798
Biotype: lincRNA
Gene id: ENSG00000228971
Gene Name: RP11-286B14.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
319-345
0.051
0
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