LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-128-3p


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Gene
miRNA
Score
DIANA Links
AC005740.6
hsa-miR-128-3p
0.938
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000607378
Biotype: antisense
Gene id: ENSG00000271871
Gene Name: AC005740.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
539-558
0.055
4
RP11-449P15.2
hsa-miR-128-3p
0.938
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000609998
Biotype: antisense
Gene id: ENSG00000273151
Gene Name: RP11-449P15.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
706-718
0.036
1
7mer
614-639
0.009
1
8mer
1642-1654
0.007
0
6mer
5830-5849
0.002
2
6mer
2538-2552
0.001
0
6mer
4562-4579
0.001
1
LINC00336
hsa-miR-128-3p
0.938
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000477984
Biotype: lincRNA
Gene id: ENSG00000197251
Gene Name: LINC00336
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
141-164
0.046
1
7mer
1600-1616
0.009
0
XLOC_003061
hsa-miR-128-3p
0.937
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00007127
Biotype: transcript isomorph
Gene id: XLOC_003061
Gene Name: XLOC_003061
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
5049-5055
0.014
0
7mer
327-345
0.012
2
8mer
2097-2117
0.010
Not Conserved
8mer
2447-2461
0.005
0
6mer
6753-6776
0.004
2
6mer
438-456
0.003
2
7mer
4237-4260
0.002
0
6mer
6662-6685
0.002
2
6mer
3466-3490
0.002
1
RP1-257A15.1
hsa-miR-128-3p
0.937
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000418665
Biotype: antisense
Gene id: ENSG00000225437
Gene Name: RP1-257A15.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
189-211
0.045
0
7mer
352-362
0.006
1
6mer
1194-1204
0.003
1
RP11-89K21.1
hsa-miR-128-3p
0.937
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000437916
Biotype: lincRNA
Gene id: ENSG00000259439
Gene Name: RP11-89K21.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Kidney Normal/Primary
A549 Lung Cancer/Malignant
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1605-1629
0.042
8
6mer
332-356
0.005
4
6mer
653-674
0.002
2
6mer
82-94
0.002
0
6mer
576-591
0.002
1
6mer
1324-1342
0.001
0
XLOC_010574
hsa-miR-128-3p
0.937
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021973
Biotype: transcript isomorph
Gene id: XLOC_010574
Gene Name: XLOC_010574
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
7-24
0.042
1
6mer
1256-1267
0.008
2
6mer
101-106
0.005
Not Conserved
KCNA3
hsa-miR-128-3p
0.936
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000566942
Biotype: lincRNA
Gene id: ENSG00000259834
Gene Name: KCNA3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
419-432
0.026
7
6mer
463-478
0.011
8
6mer
113-126
0.008
6
7mer
1991-2012
0.006
2
6mer
788-814
0.004
4
RP13-735L24.1
hsa-miR-128-3p
0.936
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000567749
Biotype: lincRNA
Gene id: ENSG00000260423
Gene Name: RP13-735L24.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3780-3794
0.015
1
8mer
562-579
0.013
0
8mer
2921-2947
0.009
1
6mer
4169-4189
0.007
1
7mer
3233-3254
0.003
0
6mer
3114-3132
0.002
1
6mer
1747-1752
0.002
0
6mer
574-595
0.002
Not Conserved
6mer
2329-2342
0.001
1
6mer
2721-2746
0.001
1
RP11-658F2.8
hsa-miR-128-3p
0.936
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000550837
Biotype: antisense
Gene id: ENSG00000258297
Gene Name: RP11-658F2.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2023-2030
0.055
2
RP11-9N12.2
hsa-miR-128-3p
0.936
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000625026
Biotype: antisense
Gene id: ENSG00000278981
Gene Name: RP11-9N12.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1191-1213
0.021
1
7mer
1006-1026
0.013
1
7mer
111-123
0.008
3
7mer
799-812
0.007
3
6mer
1386-1400
0.004
1
6mer
882-892
0.002
2
LINC00222
hsa-miR-128-3p
0.935
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000416104
Biotype: lincRNA
Gene id: ENSG00000203801
Gene Name: LINC00222
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1480-1492
0.033
6
7mer
826-842
0.010
2
7mer
1168-1181
0.007
1
6mer
26-38
0.003
0
6mer
924-942
0.001
1
XLOC_011309
hsa-miR-128-3p
0.935
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023980
Biotype: transcript isomorph
Gene id: XLOC_011309
Gene Name: XLOC_011309
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
571-586
0.054
1
XLOC_001489
hsa-miR-128-3p
0.935
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00002901
Biotype: transcript isomorph
Gene id: XLOC_001489
Gene Name: XLOC_001489
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
289-307
0.051
0
6mer
1784-1810
0.003
0
RP5-1172A22.1
hsa-miR-128-3p
0.935
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000444114
Biotype: lincRNA
Gene id: ENSG00000233521
Gene Name: RP5-1172A22.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
45-60
0.054
0
RP4-655J12.4
hsa-miR-128-3p
0.934
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000437308
Biotype: lincRNA
Gene id: ENSG00000233154
Gene Name: RP4-655J12.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
14-37
0.054
1
LINC00293
hsa-miR-128-3p
0.934
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: NR_027012.1
Biotype: lincRNA
Gene id: NR_027012.1 (gene)
Gene Name: LINC00293
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2103-2116
0.054
1
XLOC_006468
hsa-miR-128-3p
0.933
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00012911
Biotype: transcript isomorph
Gene id: XLOC_006468
Gene Name: XLOC_006468
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3150-3162
0.035
1
6mer
3343-3354
0.007
1
6mer
228-248
0.005
0
6mer
3335-3354
0.005
1
6mer
1582-1609
0.001
0
XXbac-BPG252P9.9
hsa-miR-128-3p
0.932
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000607476
Biotype: antisense
Gene id: ENSG00000272540
Gene Name: XXbac-BPG252P9.9
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
120-130
0.054
1
RP11-626K17.3
hsa-miR-128-3p
0.932
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000565549
Biotype: lincRNA
Gene id: ENSG00000261541
Gene Name: RP11-626K17.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1349-1363
0.034
2
8mer
3365-3374
0.006
Not Conserved
8mer+mismatch
3491-3504
0.006
3
6mer
296-314
0.005
0
6mer
948-963
0.003
2
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