LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-128-3p


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Gene
miRNA
Score
DIANA Links
XLOC_005629
hsa-miR-128-3p
0.945
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012100
Biotype: transcript isomorph
Gene id: XLOC_005629
Gene Name: XLOC_005629
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
347-366
0.041
0
7mer
176-193
0.013
0
6mer
498-510
0.002
0
6mer
1663-1690
0.001
Not Conserved
RP11-658F2.8
hsa-miR-128-3p
0.945
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000548810
Biotype: antisense
Gene id: ENSG00000258297
Gene Name: RP11-658F2.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
235-242
0.057
2
LINC00661
hsa-miR-128-3p
0.945
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000549354
Biotype: lincRNA
Gene id: ENSG00000205396
Gene Name: LINC00661
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1483-1495
0.046
1
6mer
3263-3284
0.008
0
6mer
1826-1853
0.003
1
TUG1
hsa-miR-128-3p
0.944
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000521091
Biotype: antisense
Gene id: ENSG00000253352
Gene Name: TUG1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
600-626
0.047
8
6mer
1554-1564
0.004
2
6mer
272-292
0.004
3
6mer
1273-1295
0.002
0
RP11-317J10.2
hsa-miR-128-3p
0.943
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000517697
Biotype: antisense
Gene id: ENSG00000253549
Gene Name: RP11-317J10.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
218-243
0.044
6
7mer
406-421
0.012
1
RP11-147C23.1
hsa-miR-128-3p
0.942
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000623349
Biotype: lincRNA
Gene id: ENSG00000237435
Gene Name: RP11-147C23.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
505-524
0.056
2
RP11-147C23.1
hsa-miR-128-3p
0.942
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000598129
Biotype: lincRNA
Gene id: ENSG00000237435
Gene Name: RP11-147C23.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
598-617
0.056
2
RP11-147C23.1
hsa-miR-128-3p
0.942
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000623085
Biotype: lincRNA
Gene id: ENSG00000237435
Gene Name: RP11-147C23.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
628-647
0.056
2
XLOC_005062
hsa-miR-128-3p
0.942
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010536
Biotype: transcript isomorph
Gene id: XLOC_005062
Gene Name: XLOC_005062
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
36-54
0.056
0
RP11-147C23.1
hsa-miR-128-3p
0.942
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000623830
Biotype: lincRNA
Gene id: ENSG00000237435
Gene Name: RP11-147C23.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
746-765
0.056
2
RP11-147C23.1
hsa-miR-128-3p
0.942
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000595613
Biotype: lincRNA
Gene id: ENSG00000237435
Gene Name: RP11-147C23.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
550-569
0.056
2
XLOC_006422
hsa-miR-128-3p
0.942
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013161
Biotype: transcript isomorph
Gene id: XLOC_006422
Gene Name: XLOC_006422
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
201-207
0.029
0
8mer
136-142
0.027
0
XLOC_009389
hsa-miR-128-3p
0.941
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019588
Biotype: transcript isomorph
Gene id: XLOC_009389
Gene Name: XLOC_009389
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1537-1555
0.036
2
7mer
243-255
0.016
0
6mer
1315-1340
0.005
1
UG0898H09
hsa-miR-128-3p
0.941
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000623646
Biotype: lincRNA
Gene id: ENSG00000274956
Gene Name: UG0898H09
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
6658-6675
0.028
9
8mer
634-656
0.012
0
6mer
6309-6327
0.005
4
8mer
5333-5359
0.005
0
6mer
6779-6791
0.004
0
6mer
2865-2888
0.001
0
MIAT
hsa-miR-128-3p
0.940
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000413665
Biotype: lincRNA
Gene id: ENSG00000225783
Gene Name: MIAT
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
894-910
0.056
2
ZNF625-ZNF20
hsa-miR-128-3p
0.940
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: NR_037802.1
Biotype: sense
Gene id: NR_037802.1 (gene)
Gene Name: ZNF625-ZNF20
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
50-65
0.012
0
9mer
289-303
0.012
Not Conserved
8mer
2590-2613
0.010
1
8mer
3302-3316
0.007
0
6mer
85-109
0.005
Not Conserved
7mer
1384-1410
0.005
1
6mer
2614-2629
0.003
1
XLOC_013265
hsa-miR-128-3p
0.939
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027227
Biotype: transcript isomorph
Gene id: XLOC_013265
Gene Name: XLOC_013265
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1047-1072
0.043
0
6mer
25-42
0.013
0
RP4-657D16.3
hsa-miR-128-3p
0.939
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000586761
Biotype: antisense
Gene id: ENSG00000266993
Gene Name: RP4-657D16.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
367-387
0.038
6
8mer
89-107
0.018
0
MIATNB
hsa-miR-128-3p
0.939
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000437071
Biotype: lincRNA
Gene id: ENSG00000244625
Gene Name: MIATNB
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
501-524
0.055
0
XLOC_009145
hsa-miR-128-3p
0.939
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019312
Biotype: transcript isomorph
Gene id: XLOC_009145
Gene Name: XLOC_009145
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-128-3p
Sequence: ucacagugaaccggucucuuu
MirBase ID: MIMAT0000424
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
650-668
0.055
1
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