LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-125b-5p


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Gene
miRNA
Score
DIANA Links
FTO-IT1
hsa-miR-125b-5p
0.701
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000563011
Biotype: sense_intronic
Gene id: ENSG00000260936
Gene Name: FTO-IT1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
239-263
0.008
1
7mer
234-256
0.007
0
7mer
1066-1088
0.005
Not Conserved
6mer
1040-1055
0.004
1
CTA-414D7.1
hsa-miR-125b-5p
0.701
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623440
Biotype: sense_intronic
Gene id: ENSG00000279175
Gene Name: CTA-414D7.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
13266-13292
0.013
0
7mer
725-743
0.006
Not Conserved
7mer
4763-4777
0.002
0
6mer
3400-3417
0.002
1
6mer
6657-6669
0.001
0
6mer
3724-3744
0.001
0
6mer
4999-5018
0.001
0
AC004158.2
hsa-miR-125b-5p
0.701
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000561611
Biotype: lincRNA
Gene id: ENSG00000261008
Gene Name: AC004158.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2082-2105
0.018
0
6mer
170-190
0.004
9
6mer
2091-2114
0.003
1
LINC01010
hsa-miR-125b-5p
0.701
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000456749
Biotype: lincRNA
Gene id: ENSG00000236700
Gene Name: LINC01010
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1333-1358
0.016
5
6mer
1282-1303
0.006
4
6mer
777-795
0.003
3
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