LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-125b-5p


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Gene
miRNA
Score
DIANA Links
XLOC_000738
hsa-miR-125b-5p
0.705
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000483
Biotype: transcript isomorph
Gene id: XLOC_000738
Gene Name: XLOC_000738
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Lymph Node Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
834-861
0.017
1
7mer
737-757
0.008
2
RP3-395M20.8
hsa-miR-125b-5p
0.705
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000449660
Biotype: lincRNA
Gene id: ENSG00000238164
Gene Name: RP3-395M20.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HepG2 Liver Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1498-1525
0.019
0
6mer
987-1003
0.003
0
6mer
514-531
0.002
0
MEG3
hsa-miR-125b-5p
0.705
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000554639
Biotype: lincRNA
Gene id: ENSG00000214548
Gene Name: MEG3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
80-101
0.020
1
7mer
1100-1114
0.005
1
AC098617.1
hsa-miR-125b-5p
0.704
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000595918
Biotype: antisense
Gene id: ENSG00000233766
Gene Name: AC098617.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
240-246
0.018
0
7mer
690-707
0.007
1
RP11-626I20.3
hsa-miR-125b-5p
0.704
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000550185
Biotype: lincRNA
Gene id: ENSG00000257762
Gene Name: RP11-626I20.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2758-2776
0.015
0
7mer
2498-2516
0.010
1
C12orf80
hsa-miR-125b-5p
0.704
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000551332
Biotype: lincRNA
Gene id: ENSG00000257137
Gene Name: C12orf80
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
531-550
0.022
5
6mer
137-162
0.003
2
AC018742.1
hsa-miR-125b-5p
0.704
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000435682
Biotype: lincRNA
Gene id: ENSG00000229621
Gene Name: AC018742.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1476-1499
0.019
1
6mer
1285-1305
0.003
2
6mer
714-734
0.003
0
LINC00504
hsa-miR-125b-5p
0.704
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000505089
Biotype: lincRNA
Gene id: ENSG00000248360
Gene Name: LINC00504
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
520-544
0.013
3
8mer
1284-1310
0.011
0
RP11-407B7.1
hsa-miR-125b-5p
0.704
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000598535
Biotype: lincRNA
Gene id: ENSG00000230102
Gene Name: RP11-407B7.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
36-47
0.018
0
6mer
523-547
0.007
3
AC099684.1
hsa-miR-125b-5p
0.704
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000425277
Biotype: antisense
Gene id: ENSG00000228133
Gene Name: AC099684.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1659-1673
0.021
3
6mer
1024-1049
0.002
0
6mer
1321-1341
0.002
0
AC096772.6
hsa-miR-125b-5p
0.703
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000343987
Biotype: lincRNA
Gene id: ENSG00000244567
Gene Name: AC096772.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
943-949
0.025
6
XLOC_013601
hsa-miR-125b-5p
0.703
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028261
Biotype: transcript isomorph
Gene id: XLOC_013601
Gene Name: XLOC_013601
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Placenta Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
238-246
0.003
1
7mer
1276-1302
0.003
1
8mer+mismatch
9630-9655
0.003
1
7mer
9262-9287
0.002
2
6mer
6737-6760
0.002
2
6mer
5110-5135
0.001
1
6mer
9146-9172
0.001
1
7mer
3184-3203
0.001
1
6mer
4136-4142
0.001
1
6mer
8972-8983
0.001
3
6mer
8770-8794
0.001
1
7mer
4305-4322
0.001
1
7mer
4801-4818
0.001
1
6mer
4727-4739
0.001
1
6mer
1422-1448
0.000
1
6mer
8894-8919
0.000
2
6mer
5158-5184
0.000
2
6mer
5181-5205
0.000
0
DNAJC3-AS1
hsa-miR-125b-5p
0.703
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000606011
Biotype: lincRNA
Gene id: ENSG00000247400
Gene Name: DNAJC3-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
139-162
0.023
3
8mer+mismatch
291-313
0.002
Not Conserved
RP11-390F4.3
hsa-miR-125b-5p
0.703
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000615168
Biotype: lincRNA
Gene id: ENSG00000225489
Gene Name: RP11-390F4.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
224-231
0.020
0
7mer
499-512
0.003
0
6mer
650-668
0.001
0
RP11-91P24.6
hsa-miR-125b-5p
0.702
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000530972
Biotype: antisense
Gene id: ENSG00000255449
Gene Name: RP11-91P24.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
625-636
0.025
1
RP11-425M5.7
hsa-miR-125b-5p
0.702
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000620327
Biotype: sense_intronic
Gene id: ENSG00000276603
Gene Name: RP11-425M5.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
322-349
0.025
5
LINC01010
hsa-miR-125b-5p
0.702
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: NR_038219.1
Biotype: lincRNA
Gene id: NR_038219.1 (gene)
Gene Name: LINC01010
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1486-1511
0.016
5
6mer
1435-1456
0.006
4
6mer
930-948
0.003
3
MIR4313
hsa-miR-125b-5p
0.702
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000561777
Biotype: lincRNA
Gene id: ENSG00000261043
Gene Name: MIR4313
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
2732-2751
0.011
1
6mer
2129-2156
0.007
1
6mer
2365-2381
0.005
0
6mer
918-943
0.002
0
OR2A1-AS1
hsa-miR-125b-5p
0.702
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000487102
Biotype: antisense
Gene id: ENSG00000244479
Gene Name: OR2A1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
729-753
0.025
3
ZNF213-AS1
hsa-miR-125b-5p
0.702
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000576490
Biotype: antisense
Gene id: ENSG00000263072
Gene Name: ZNF213-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
178-196
0.025
1
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