LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-125b-5p


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Gene
miRNA
Score
DIANA Links
XLOC_014129
hsa-miR-125b-5p
0.715
mTTBlnEmP

Gene Details
Chromosome: chr21
Transcript: TCONS_00029187
Biotype: transcript isomorph
Gene id: XLOC_014129
Gene Name: XLOC_014129
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
581-605
0.015
0
7mer
945-967
0.011
0
XLOC_006568
hsa-miR-125b-5p
0.714
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00012923
Biotype: transcript isomorph
Gene id: XLOC_006568
Gene Name: XLOC_006568
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
463-479
0.026
5
RP3-439F8.1
hsa-miR-125b-5p
0.714
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000426112
Biotype: antisense
Gene id: ENSG00000234869
Gene Name: RP3-439F8.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Breast Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
948-973
0.007
1
6mer
2658-2678
0.004
1
6mer
310-320
0.004
1
7mer
811-832
0.004
0
7mer
1566-1583
0.002
0
6mer
2221-2246
0.002
1
6mer
2557-2578
0.002
0
6mer
1777-1795
0.001
2
KB-1517D11.4
hsa-miR-125b-5p
0.714
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000605923
Biotype: antisense
Gene id: ENSG00000272321
Gene Name: KB-1517D11.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1679-1701
0.017
4
6mer
2496-2519
0.005
3
6mer
149-175
0.003
1
XLOC_009564
hsa-miR-125b-5p
0.714
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019770
Biotype: transcript isomorph
Gene id: XLOC_009564
Gene Name: XLOC_009564
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
64-86
0.026
6
RP11-192H23.5
hsa-miR-125b-5p
0.714
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000585189
Biotype: antisense
Gene id: ENSG00000265168
Gene Name: RP11-192H23.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
255-273
0.018
7
6mer
39-56
0.005
4
6mer
95-114
0.002
0
RP11-141J13.5
hsa-miR-125b-5p
0.713
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000573270
Biotype: lincRNA
Gene id: ENSG00000261863
Gene Name: RP11-141J13.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1076-1085
0.021
0
7mer
1009-1032
0.004
Not Conserved
XLOC_002216
hsa-miR-125b-5p
0.713
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004342
Biotype: transcript isomorph
Gene id: XLOC_002216
Gene Name: XLOC_002216
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
- Colon Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
121-140
0.013
1
6mer
216-236
0.006
0
6mer
19-24
0.006
0
CTD-3195I5.3
hsa-miR-125b-5p
0.713
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000571741
Biotype: antisense
Gene id: ENSG00000262692
Gene Name: CTD-3195I5.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
95-108
0.026
2
ZBED3-AS1
hsa-miR-125b-5p
0.712
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000511547
Biotype: antisense
Gene id: ENSG00000250802
Gene Name: ZBED3-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
165-183
0.026
1
XLOC_009663
hsa-miR-125b-5p
0.712
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00021065
Biotype: transcript isomorph
Gene id: XLOC_009663
Gene Name: XLOC_009663
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
227-233
0.026
1
RP11-115D19.1
hsa-miR-125b-5p
0.712
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000513572
Biotype: antisense
Gene id: ENSG00000251095
Gene Name: RP11-115D19.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1419-1440
0.025
2
RP11-473O4.4
hsa-miR-125b-5p
0.711
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000521014
Biotype: lincRNA
Gene id: ENSG00000254263
Gene Name: RP11-473O4.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
325-349
0.025
1
RP11-458K10.2
hsa-miR-125b-5p
0.711
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000470532
Biotype: lincRNA
Gene id: ENSG00000240973
Gene Name: RP11-458K10.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
464-480
0.025
5
XLOC_005243
hsa-miR-125b-5p
0.711
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011115
Biotype: transcript isomorph
Gene id: XLOC_005243
Gene Name: XLOC_005243
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- Thyroid Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
355-369
0.004
3
6mer
5092-5111
0.003
0
6mer
228-246
0.002
1
7mer
4466-4491
0.002
0
6mer
2710-2732
0.002
0
7mer
3624-3646
0.001
Not Conserved
6mer
3388-3410
0.001
0
6mer
355-377
0.001
1
6mer
3002-3017
0.001
0
6mer
2120-2136
0.001
Not Conserved
6mer
3472-3489
0.001
0
6mer
2388-2404
0.001
1
6mer
2520-2536
0.001
0
6mer
3587-3606
0.001
0
6mer
2153-2169
0.000
0
6mer
2241-2268
0.000
0
6mer
2454-2470
0.000
0
6mer
2285-2301
0.000
0
6mer
2487-2503
0.000
0
6mer
2322-2338
0.000
0
6mer
2421-2437
0.000
0
6mer
2717-2741
0.000
0
6mer
2180-2202
0.000
0
6mer
3553-3557
0.000
0
6mer
3400-3424
0.000
0
XLOC_002606
hsa-miR-125b-5p
0.711
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00005976
Biotype: transcript isomorph
Gene id: XLOC_002606
Gene Name: XLOC_002606
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
81-99
0.025
0
AC004951.6
hsa-miR-125b-5p
0.711
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000447643
Biotype: lincRNA
Gene id: ENSG00000228434
Gene Name: AC004951.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1340-1356
0.019
0
6mer
751-775
0.007
0
CFLAR-AS1
hsa-miR-125b-5p
0.711
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000601974
Biotype: antisense
Gene id: ENSG00000226312
Gene Name: CFLAR-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
399-416
0.025
1
XLOC_010592
hsa-miR-125b-5p
0.710
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021992
Biotype: transcript isomorph
Gene id: XLOC_010592
Gene Name: XLOC_010592
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
5244-5265
0.016
Not Conserved
8mer
3318-3339
0.006
Not Conserved
8mer+wobble
2783-2804
0.003
0
6mer
4590-4601
0.001
Not Conserved
NEXN-AS1
hsa-miR-125b-5p
0.710
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000620892
Biotype: antisense
Gene id: ENSG00000235927
Gene Name: NEXN-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
282-300
0.025
1
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