LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-125b-5p


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Gene
miRNA
Score
DIANA Links
XLOC_007166
hsa-miR-125b-5p
0.719
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00015109
Biotype: transcript isomorph
Gene id: XLOC_007166
Gene Name: XLOC_007166
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4340-4365
0.009
0
7mer
375-401
0.008
Not Conserved
6mer
184-204
0.005
0
6mer
3546-3569
0.002
1
6mer
3209-3227
0.002
0
6mer
3063-3087
0.001
1
TEX41
hsa-miR-125b-5p
0.719
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000597655
Biotype: lincRNA
Gene id: ENSG00000226674
Gene Name: TEX41
UCSC graphic:
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
123-143
0.015
0
7mer
565-585
0.011
2
RP11-253E3.3
hsa-miR-125b-5p
0.719
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000513358
Biotype: lincRNA
Gene id: ENSG00000250899
Gene Name: RP11-253E3.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
759-780
0.025
2
6mer
2254-2274
0.001
1
RP11-348J12.2
hsa-miR-125b-5p
0.719
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000444965
Biotype: antisense
Gene id: ENSG00000226425
Gene Name: RP11-348J12.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
357-364
0.022
2
6mer
177-203
0.004
0
SNAI3-AS1
hsa-miR-125b-5p
0.719
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000568633
Biotype: antisense
Gene id: ENSG00000260630
Gene Name: SNAI3-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
967-979
0.011
1
7mer
2000-2015
0.009
0
6mer
480-489
0.004
3
6mer
876-896
0.002
1
XLOC_013026
hsa-miR-125b-5p
0.719
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00026974
Biotype: transcript isomorph
Gene id: XLOC_013026
Gene Name: XLOC_013026
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
625-644
0.022
2
6mer
136-154
0.004
1
CTC-503K11.2
hsa-miR-125b-5p
0.719
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000507050
Biotype: antisense
Gene id: ENSG00000248203
Gene Name: CTC-503K11.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
260-266
0.026
5
XLOC_003455
hsa-miR-125b-5p
0.718
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00007986
Biotype: transcript isomorph
Gene id: XLOC_003455
Gene Name: XLOC_003455
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Colon Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
612-633
0.023
1
6mer
99-118
0.003
1
XLOC_009038
hsa-miR-125b-5p
0.718
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019202
Biotype: transcript isomorph
Gene id: XLOC_009038
Gene Name: XLOC_009038
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
698-713
0.017
1
6mer
9-30
0.003
1
6mer
142-168
0.003
1
6mer
210-219
0.002
0
RP11-371F15.3
hsa-miR-125b-5p
0.718
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000505607
Biotype: antisense
Gene id: ENSG00000250195
Gene Name: RP11-371F15.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Lung Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
163-186
0.026
2
RP11-685A21.1
hsa-miR-125b-5p
0.717
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000591900
Biotype: lincRNA
Gene id: ENSG00000267215
Gene Name: RP11-685A21.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
102-111
0.026
2
RP11-116D17.2
hsa-miR-125b-5p
0.717
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000546696
Biotype: lincRNA
Gene id: ENSG00000257519
Gene Name: RP11-116D17.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
426-441
0.026
1
RP11-571L19.8
hsa-miR-125b-5p
0.717
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000609071
Biotype: lincRNA
Gene id: ENSG00000272777
Gene Name: RP11-571L19.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
656-679
0.026
0
FAM66A
hsa-miR-125b-5p
0.716
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000525829
Biotype: lincRNA
Gene id: ENSG00000227888
Gene Name: FAM66A
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
57-72
0.011
0
6mer
877-893
0.009
2
7mer
192-203
0.006
0
XLOC_007869
hsa-miR-125b-5p
0.716
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016492
Biotype: transcript isomorph
Gene id: XLOC_007869
Gene Name: XLOC_007869
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
73-80
0.026
1
RP11-498C9.3
hsa-miR-125b-5p
0.716
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000576554
Biotype: antisense
Gene id: ENSG00000262413
Gene Name: RP11-498C9.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
153-167
0.014
4
6mer
23-41
0.007
5
6mer
316-338
0.004
1
6mer
411-429
0.002
2
XLOC_011184
hsa-miR-125b-5p
0.716
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023883
Biotype: transcript isomorph
Gene id: XLOC_011184
Gene Name: XLOC_011184
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
52-58
0.022
1
6mer
364-382
0.004
1
PCBP1-AS1
hsa-miR-125b-5p
0.715
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000614826
Biotype: antisense
Gene id: ENSG00000179818
Gene Name: PCBP1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
313-335
0.026
0
DLX6-AS1
hsa-miR-125b-5p
0.715
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000452769
Biotype: antisense
Gene id: ENSG00000231764
Gene Name: DLX6-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
3348-3368
0.019
1
6mer
3247-3266
0.002
1
8mer+mismatch
3083-3101
0.002
1
6mer
3211-3233
0.002
0
6mer
2426-2448
0.001
0
XLOC_004475
hsa-miR-125b-5p
0.715
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010742
Biotype: transcript isomorph
Gene id: XLOC_004475
Gene Name: XLOC_004475
UCSC graphic: -
Expression:
  Cell Line Tissue Category
Fibroblasts Lung Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
373-397
0.012
1
8mer
883-907
0.010
3
6mer
651-678
0.002
2
6mer
258-275
0.001
0
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