LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-125b-5p


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Gene
miRNA
Score
DIANA Links
XLOC_002746
hsa-miR-125b-5p
0.723
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006143
Biotype: transcript isomorph
Gene id: XLOC_002746
Gene Name: XLOC_002746
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
7411-7429
0.011
0
8mer
4549-4571
0.005
0
6mer
9550-9570
0.003
1
6mer
2684-2688
0.002
4
6mer
1587-1614
0.002
2
6mer
3938-3962
0.002
0
6mer
5961-5982
0.002
0
6mer
6003-6016
0.000
0
C1RL-AS1
hsa-miR-125b-5p
0.723
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000541775
Biotype: antisense
Gene id: ENSG00000205885
Gene Name: C1RL-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
5120-5142
0.019
0
7mer
1407-1425
0.004
1
6mer
2479-2498
0.002
2
6mer
3835-3848
0.001
1
6mer
3143-3167
0.001
3
TRAF3IP2-AS1
hsa-miR-125b-5p
0.722
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000532226
Biotype: antisense
Gene id: ENSG00000231889
Gene Name: TRAF3IP2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1572-1582
0.026
3
RP3-510H16.3
hsa-miR-125b-5p
0.722
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000609073
Biotype: antisense
Gene id: ENSG00000273176
Gene Name: RP3-510H16.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
210-234
0.026
2
RP11-221N13.3
hsa-miR-125b-5p
0.722
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000539116
Biotype: lincRNA
Gene id: ENSG00000256268
Gene Name: RP11-221N13.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
137-161
0.026
0
RP11-138P22.1
hsa-miR-125b-5p
0.722
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000581901
Biotype: antisense
Gene id: ENSG00000266527
Gene Name: RP11-138P22.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1351-1365
0.016
5
6mer
1773-1791
0.002
2
6mer
1819-1841
0.002
2
6mer
942-946
0.002
3
6mer
761-787
0.002
2
6mer
1176-1201
0.001
1
6mer
1464-1476
0.001
1
RP11-66B24.4
hsa-miR-125b-5p
0.721
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000560068
Biotype: antisense
Gene id: ENSG00000259583
Gene Name: RP11-66B24.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
126-142
0.023
1
6mer
791-810
0.002
2
6mer
1566-1593
0.002
3
AP001053.11
hsa-miR-125b-5p
0.721
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000400385
Biotype: antisense
Gene id: ENSG00000215458
Gene Name: AP001053.11
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3739-3763
0.008
1
8mer
4086-4110
0.007
0
8mer
3111-3128
0.007
1
8mer+wobble
3296-3322
0.002
Not Conserved
6mer
4542-4563
0.002
2
RP11-351M8.1
hsa-miR-125b-5p
0.721
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000561295
Biotype: antisense
Gene id: ENSG00000259649
Gene Name: RP11-351M8.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
413-439
0.024
1
6mer
315-337
0.002
0
RP11-386G11.3
hsa-miR-125b-5p
0.721
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000549516
Biotype: antisense
Gene id: ENSG00000258283
Gene Name: RP11-386G11.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
127-152
0.026
4
CTD-3162L10.1
hsa-miR-125b-5p
0.721
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000600983
Biotype: lincRNA
Gene id: ENSG00000267053
Gene Name: CTD-3162L10.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1601-1627
0.014
1
6mer
250-273
0.006
1
7mer
1493-1519
0.005
0
6mer
773-795
0.002
0
XLOC_001556
hsa-miR-125b-5p
0.721
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004835
Biotype: transcript isomorph
Gene id: XLOC_001556
Gene Name: XLOC_001556
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
26-46
0.026
3
RP11-181G12.4
hsa-miR-125b-5p
0.721
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000442483
Biotype: lincRNA
Gene id: ENSG00000234396
Gene Name: RP11-181G12.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
97-123
0.026
3
AC062029.1
hsa-miR-125b-5p
0.721
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000606164
Biotype: antisense
Gene id: ENSG00000234028
Gene Name: AC062029.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2785-2807
0.017
0
7mer
2422-2428
0.009
1
XLOC_014057
hsa-miR-125b-5p
0.720
mTTBlnEmP

Gene Details
Chromosome: chr21
Transcript: TCONS_00029275
Biotype: transcript isomorph
Gene id: XLOC_014057
Gene Name: XLOC_014057
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
231-244
0.026
1
CTD-3162L10.1
hsa-miR-125b-5p
0.720
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000586340
Biotype: lincRNA
Gene id: ENSG00000267053
Gene Name: CTD-3162L10.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1601-1627
0.014
1
6mer
250-273
0.006
1
7mer
1493-1519
0.005
0
6mer
773-795
0.002
0
RP11-156L14.1
hsa-miR-125b-5p
0.720
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000577270
Biotype: antisense
Gene id: ENSG00000265702
Gene Name: RP11-156L14.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1174-1189
0.024
7
6mer
2429-2456
0.002
1
RP3-365O12.2
hsa-miR-125b-5p
0.720
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000451135
Biotype: antisense
Gene id: ENSG00000225730
Gene Name: RP3-365O12.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
532-557
0.022
1
6mer
412-438
0.004
3
RP11-714M23.2
hsa-miR-125b-5p
0.720
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000620778
Biotype: lincRNA
Gene id: ENSG00000277837
Gene Name: RP11-714M23.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2479-2500
0.021
2
7mer
3281-3297
0.002
0
6mer
376-402
0.002
1
7mer
2512-2529
0.001
1
6mer
3227-3240
0.001
2
WEE2-AS1
hsa-miR-125b-5p
0.719
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000495800
Biotype: antisense
Gene id: ENSG00000228775
Gene Name: WEE2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1053-1078
0.023
3
6mer
447-470
0.003
1
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