LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-125b-5p


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Gene
miRNA
Score
DIANA Links
CASC2
hsa-miR-125b-5p
0.727
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000426021
Biotype: antisense
Gene id: ENSG00000177640
Gene Name: CASC2
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2462-2481
0.016
1
6mer
2875-2900
0.005
3
6mer
2596-2613
0.003
0
6mer
2320-2340
0.002
1
FAM66C
hsa-miR-125b-5p
0.726
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000454799
Biotype: antisense
Gene id: ENSG00000226711
Gene Name: FAM66C
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
58-73
0.013
0
7mer
193-204
0.010
0
6mer
894-910
0.004
0
AC018816.3
hsa-miR-125b-5p
0.726
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000441894
Biotype: antisense
Gene id: ENSG00000235978
Gene Name: AC018816.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
134-154
0.027
4
MEG3
hsa-miR-125b-5p
0.726
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000520714
Biotype: lincRNA
Gene id: ENSG00000214548
Gene Name: MEG3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
94-115
0.019
1
7mer
1117-1131
0.007
1
RP11-419C23.1
hsa-miR-125b-5p
0.726
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000523411
Biotype: lincRNA
Gene id: ENSG00000254038
Gene Name: RP11-419C23.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
565-590
0.020
1
7mer
509-525
0.007
1
RP11-61I13.3
hsa-miR-125b-5p
0.726
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000607215
Biotype: antisense
Gene id: ENSG00000235033
Gene Name: RP11-61I13.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
107-124
0.012
2
6mer
2815-2819
0.004
0
6mer
455-475
0.003
4
7mer
1989-2006
0.003
3
6mer
435-453
0.003
3
6mer
1646-1656
0.001
0
6mer
1548-1566
0.001
0
CTD-3193O13.11
hsa-miR-125b-5p
0.725
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000597156
Biotype: lincRNA
Gene id: ENSG00000268120
Gene Name: CTD-3193O13.11
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
478-501
0.011
1
7mer
409-432
0.007
0
6mer
646-665
0.004
1
6mer
545-570
0.003
0
6mer
340-363
0.002
Not Conserved
XLOC_007486
hsa-miR-125b-5p
0.725
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016660
Biotype: transcript isomorph
Gene id: XLOC_007486
Gene Name: XLOC_007486
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
61-66
0.012
0
7mer
1293-1319
0.010
3
6mer
89-101
0.005
4
PLCB2-AS1
hsa-miR-125b-5p
0.725
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000559520
Biotype: antisense
Gene id: ENSG00000259307
Gene Name: PLCB2-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
63-82
0.021
0
7mer
489-510
0.005
0
LINC01024
hsa-miR-125b-5p
0.725
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000523452
Biotype: antisense
Gene id: ENSG00000245146
Gene Name: LINC01024
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
443-467
0.022
2
6mer
514-530
0.004
5
RP11-863P13.2
hsa-miR-125b-5p
0.724
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000568587
Biotype: lincRNA
Gene id: ENSG00000261816
Gene Name: RP11-863P13.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
224-237
0.022
1
7mer
97-122
0.005
0
DKFZp434L192
hsa-miR-125b-5p
0.724
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_026929.1
Biotype: lincRNA
Gene id: NR_026929.1 (gene)
Gene Name: DKFZp434L192
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
409-427
0.021
0
7mer
575-597
0.006
0
RP11-93H12.4
hsa-miR-125b-5p
0.724
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000474115
Biotype: antisense
Gene id: ENSG00000270002
Gene Name: RP11-93H12.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2456-2481
0.016
0
6mer
2299-2319
0.007
5
7mer
501-515
0.002
1
6mer
633-660
0.001
1
RP11-958F21.3
hsa-miR-125b-5p
0.724
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000578129
Biotype: lincRNA
Gene id: ENSG00000265552
Gene Name: RP11-958F21.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
155-178
0.026
1
FLG-AS1
hsa-miR-125b-5p
0.724
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000382265
Biotype: antisense
Gene id: ENSG00000237975
Gene Name: FLG-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HREpiC Kidney Normal/Primary
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
459-482
0.018
0
7mer
310-331
0.009
0
XLOC_003438
hsa-miR-125b-5p
0.724
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00007969
Biotype: transcript isomorph
Gene id: XLOC_003438
Gene Name: XLOC_003438
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Lung Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
470-495
0.020
1
6mer
2549-2569
0.004
Not Conserved
6mer
2401-2419
0.002
0
CTC-277H1.7
hsa-miR-125b-5p
0.724
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000573063
Biotype: retained_intron
Gene id: ENSG00000262691
Gene Name: CTC-277H1.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
731-753
0.010
1
7mer
2178-2203
0.010
1
6mer
491-508
0.004
1
6mer
29-52
0.003
1
AC005154.6
hsa-miR-125b-5p
0.723
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000355837
Biotype: retained_intron
Gene id: ENSG00000196295
Gene Name: AC005154.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
10419-10446
0.008
0
7mer
873-878
0.007
1
8mer
2589-2614
0.004
0
6mer
5751-5773
0.002
0
6mer
2975-2993
0.001
2
6mer
7614-7629
0.001
1
6mer
1867-1889
0.001
1
7mer
10408-10428
0.001
1
6mer
2906-2930
0.001
1
RP1-65J11.1
hsa-miR-125b-5p
0.723
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000438790
Biotype: lincRNA
Gene id: ENSG00000223382
Gene Name: RP1-65J11.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
136-159
0.024
2
6mer
46-64
0.002
1
RP11-221N13.3
hsa-miR-125b-5p
0.723
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000541391
Biotype: lincRNA
Gene id: ENSG00000256268
Gene Name: RP11-221N13.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
128-152
0.026
0
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