LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-125b-5p


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Gene
miRNA
Score
DIANA Links
RP11-260E18.1
hsa-miR-125b-5p
0.731
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000499131
Biotype: antisense
Gene id: ENSG00000246214
Gene Name: RP11-260E18.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
193-207
0.012
3
7mer
64-78
0.007
0
6mer
1614-1637
0.006
2
6mer
235-261
0.003
0
RP11-3M1.1
hsa-miR-125b-5p
0.731
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000563906
Biotype: sense_overlapping
Gene id: ENSG00000261538
Gene Name: RP11-3M1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
226-244
0.020
1
6mer
341-359
0.007
4
RP11-905K4.1
hsa-miR-125b-5p
0.731
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000589074
Biotype: lincRNA
Gene id: ENSG00000267627
Gene Name: RP11-905K4.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
146-168
0.022
1
6mer
333-359
0.005
1
RP11-173L6.1
hsa-miR-125b-5p
0.730
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000581971
Biotype: lincRNA
Gene id: ENSG00000266460
Gene Name: RP11-173L6.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
550-573
0.027
1
RP1-69D17.4
hsa-miR-125b-5p
0.730
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000419061
Biotype: lincRNA
Gene id: ENSG00000226149
Gene Name: RP1-69D17.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
18-36
0.027
1
XLOC_010392
hsa-miR-125b-5p
0.730
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021551
Biotype: transcript isomorph
Gene id: XLOC_010392
Gene Name: XLOC_010392
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
291-314
0.018
2
6mer
330-355
0.006
8
6mer
32-47
0.002
1
CTC-439O9.3
hsa-miR-125b-5p
0.730
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000589511
Biotype: lincRNA
Gene id: ENSG00000267777
Gene Name: CTC-439O9.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
494-514
0.012
1
6mer
151-164
0.009
7
6mer
248-269
0.003
Not Conserved
6mer
461-481
0.003
1
RP11-488L18.8
hsa-miR-125b-5p
0.730
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000428687
Biotype: lincRNA
Gene id: ENSG00000232347
Gene Name: RP11-488L18.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
270-291
0.021
0
6mer
232-253
0.006
1
XLOC_002026
hsa-miR-125b-5p
0.729
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00005117
Biotype: transcript isomorph
Gene id: XLOC_002026
Gene Name: XLOC_002026
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
158-180
0.027
0
RP11-52J3.2
hsa-miR-125b-5p
0.729
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000457427
Biotype: antisense
Gene id: ENSG00000229502
Gene Name: RP11-52J3.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
312-328
0.021
1
7mer
400-423
0.006
1
XLOC_013786
hsa-miR-125b-5p
0.728
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028434
Biotype: transcript isomorph
Gene id: XLOC_013786
Gene Name: XLOC_013786
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
461-485
0.024
2
6mer
334-338
0.003
1
CTB-180A7.3
hsa-miR-125b-5p
0.728
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000595644
Biotype: antisense
Gene id: ENSG00000269802
Gene Name: CTB-180A7.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
139-160
0.027
1
RP11-474D1.3
hsa-miR-125b-5p
0.728
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000291374
Biotype: lincRNA
Gene id: ENSG00000214039
Gene Name: RP11-474D1.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2687-2710
0.011
1
7mer
2202-2228
0.006
0
6mer
514-539
0.004
1
6mer
1345-1371
0.002
Not Conserved
6mer
1127-1131
0.002
1
6mer
1568-1581
0.001
1
6mer
2583-2604
0.001
0
VWA8-AS1
hsa-miR-125b-5p
0.728
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000612345
Biotype: antisense
Gene id: ENSG00000278338
Gene Name: VWA8-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
343-361
0.022
1
6mer
358-380
0.005
1
LINC00656
hsa-miR-125b-5p
0.727
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000443744
Biotype: lincRNA
Gene id: ENSG00000233746
Gene Name: LINC00656
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
- Lymph Node Normal/Primary
- Placenta Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1844-1869
0.017
1
8mer
1726-1748
0.010
1
RP11-618M23.4
hsa-miR-125b-5p
0.727
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000521016
Biotype: lincRNA
Gene id: ENSG00000253280
Gene Name: RP11-618M23.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
318-324
0.027
0
LINC01016
hsa-miR-125b-5p
0.727
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000506222
Biotype: lincRNA
Gene id: ENSG00000249346
Gene Name: LINC01016
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Breast Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3092-3115
0.009
0
6mer
3078-3101
0.006
5
6mer
237-258
0.004
3
6mer
291-317
0.003
0
6mer
682-707
0.002
2
6mer
721-742
0.001
1
6mer
1736-1757
0.001
1
AC004112.4
hsa-miR-125b-5p
0.727
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000431064
Biotype: antisense
Gene id: ENSG00000226851
Gene Name: AC004112.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
314-334
0.021
1
6mer
445-467
0.004
1
6mer
462-482
0.002
0
XLOC_010275
hsa-miR-125b-5p
0.727
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00021013
Biotype: transcript isomorph
Gene id: XLOC_010275
Gene Name: XLOC_010275
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
179-203
0.015
0
6mer
667-693
0.011
0
CTD-2184D3.5
hsa-miR-125b-5p
0.727
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000558607
Biotype: antisense
Gene id: ENSG00000259712
Gene Name: CTD-2184D3.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
6-22
0.008
1
6mer
109-128
0.007
1
6mer
84-100
0.005
1
6mer
206-218
0.004
0
6mer
294-320
0.003
0
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