LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-125b-5p


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Gene
miRNA
Score
DIANA Links
XLOC_009788
hsa-miR-125b-5p
0.735
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020456
Biotype: transcript isomorph
Gene id: XLOC_009788
Gene Name: XLOC_009788
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
K562 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
- Brain Normal/Primary
- Breast Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
249-273
0.025
0
6mer
2481-2506
0.003
4
LINC00664
hsa-miR-125b-5p
0.735
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000599078
Biotype: lincRNA
Gene id: ENSG00000268658
Gene Name: LINC00664
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1148-1167
0.025
0
6mer
1397-1401
0.003
1
XLOC_005414
hsa-miR-125b-5p
0.735
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011913
Biotype: transcript isomorph
Gene id: XLOC_005414
Gene Name: XLOC_005414
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
346-368
0.015
1
7mer
3432-3438
0.012
1
NR2F1-AS1
hsa-miR-125b-5p
0.735
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000607831
Biotype: antisense
Gene id: ENSG00000237187
Gene Name: NR2F1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1932-1958
0.019
2
6mer
617-643
0.005
8
6mer
1484-1502
0.001
0
6mer
1121-1141
0.001
0
RP11-311F12.1
hsa-miR-125b-5p
0.734
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000577087
Biotype: lincRNA
Gene id: ENSG00000262681
Gene Name: RP11-311F12.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
372-393
0.014
0
7mer
380-404
0.011
1
6mer
2090-2099
0.003
2
HOXB-AS3
hsa-miR-125b-5p
0.734
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000474324
Biotype: antisense
Gene id: ENSG00000233101
Gene Name: HOXB-AS3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
26-43
0.023
8
6mer
119-128
0.004
3
PRR7-AS1
hsa-miR-125b-5p
0.734
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000425316
Biotype: antisense
Gene id: ENSG00000246334
Gene Name: PRR7-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
554-577
0.018
1
7mer
258-280
0.009
1
LINC01010
hsa-miR-125b-5p
0.734
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: NR_038216.1
Biotype: lincRNA
Gene id: NR_038216.1 (gene)
Gene Name: LINC01010
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1516-1541
0.016
5
6mer
1465-1486
0.006
4
6mer
960-978
0.003
3
6mer
307-318
0.003
1
LINC00898
hsa-miR-125b-5p
0.733
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000609786
Biotype: lincRNA
Gene id: ENSG00000205634
Gene Name: LINC00898
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1187-1205
0.020
1
8mer
1061-1085
0.008
Not Conserved
XLOC_003027
hsa-miR-125b-5p
0.733
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006403
Biotype: transcript isomorph
Gene id: XLOC_003027
Gene Name: XLOC_003027
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2488-2507
0.011
0
7mer
612-639
0.007
1
7mer
3405-3431
0.007
1
6mer
276-294
0.003
1
LINC00898
hsa-miR-125b-5p
0.733
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000610069
Biotype: lincRNA
Gene id: ENSG00000205634
Gene Name: LINC00898
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1053-1071
0.020
1
8mer
927-951
0.008
Not Conserved
MIRLET7BHG
hsa-miR-125b-5p
0.733
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000360737
Biotype: lincRNA
Gene id: ENSG00000197182
Gene Name: MIRLET7BHG
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer+wobble
4331-4349
0.020
11
6mer
4126-4146
0.002
Not Conserved
8mer+mismatch
1064-1086
0.002
0
6mer
2297-2309
0.001
0
7mer
1173-1193
0.001
0
6mer
1163-1184
0.001
0
6mer
2622-2647
0.001
0
XLOC_006793
hsa-miR-125b-5p
0.733
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014696
Biotype: transcript isomorph
Gene id: XLOC_006793
Gene Name: XLOC_006793
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
196-215
0.027
1
XLOC_011436
hsa-miR-125b-5p
0.733
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023638
Biotype: transcript isomorph
Gene id: XLOC_011436
Gene Name: XLOC_011436
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
321-341
0.027
5
AC018816.3
hsa-miR-125b-5p
0.732
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000465436
Biotype: antisense
Gene id: ENSG00000235978
Gene Name: AC018816.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
137-157
0.027
4
RP1-313I6.12
hsa-miR-125b-5p
0.732
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000605945
Biotype: antisense
Gene id: ENSG00000272009
Gene Name: RP1-313I6.12
UCSC graphic:
Expression:
  Cell Line Tissue Category
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
336-360
0.024
1
6mer
444-463
0.003
1
LINC00889
hsa-miR-125b-5p
0.732
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: NR_026935.1
Biotype: lincRNA
Gene id: NR_026935.1 (gene)
Gene Name: LINC00889
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1965-1985
0.025
1
6mer
1255-1263
0.002
0
RP11-661A12.9
hsa-miR-125b-5p
0.732
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000531730
Biotype: antisense
Gene id: ENSG00000255050
Gene Name: RP11-661A12.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
349-371
0.015
7
7mer
335-354
0.005
2
6mer
821-847
0.002
4
6mer
658-684
0.002
1
6mer
381-404
0.002
1
RP11-474D1.3
hsa-miR-125b-5p
0.731
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000567788
Biotype: lincRNA
Gene id: ENSG00000214039
Gene Name: RP11-474D1.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2687-2710
0.007
1
6mer
4511-4527
0.006
1
7mer
2202-2228
0.005
0
6mer
514-539
0.004
1
6mer
1345-1371
0.002
Not Conserved
6mer
1127-1131
0.002
1
6mer
1568-1581
0.001
1
6mer
2583-2604
0.001
0
RP5-1119O21.2
hsa-miR-125b-5p
0.731
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000413941
Biotype: lincRNA
Gene id: ENSG00000226861
Gene Name: RP5-1119O21.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
90-104
0.022
6
6mer
229-251
0.005
6
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